Factsheet for Solyc03g112640.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

plastid: 20363867

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046785	Potato	mitochondrion	94.66	94.66
VIT_17s0000g08850.t01	Wine grape	mitochondrion	68.32	68.85
Os02t0321500-01	Rice	mitochondrion	65.27	65.52
HORVU0Hr1G022240.10	Barley	mitochondrion	64.89	64.89
TraesCS7A01G460600.1	Wheat	mitochondrion, plastid	64.5	64.5
KXG19106	Sorghum	plastid	62.98	64.45
KRH57102	Soybean	cytosol, plastid	64.12	64.12
KRH03256	Soybean	endoplasmic reticulum, plastid	63.74	63.74
CDY16746	Canola	plastid	60.31	62.2
CDX87279	Canola	plastid	60.31	62.2
Bra035864.1-P	Field mustard	plastid	60.31	62.2
GSMUA_Achr3P14480_001	Banana	mitochondrion	61.45	61.45
AT5G63060.1	Thale cress	plastid	59.92	59.7
Zm00001d045573_P004	Maize	plastid	34.73	56.52
TraesCS7B01G361800.2	Wheat	mitochondrion, plastid	64.5	55.23
TraesCS7D01G448500.3	Wheat	mitochondrion, plastid	64.5	54.52
Zm00001d045574_P002	Maize	plastid	62.21	31.71
Solyc01g005290.2.1	Tomato	cytosol	17.18	22.73
Solyc03g118150.2.1	Tomato	cytosol	21.76	21.03
Solyc01g005260.2.1	Tomato	cytosol	18.7	20.42
Solyc04g080290.2.1	Tomato	cytosol	22.14	20.21
Solyc01g005270.2.1	Tomato	cytosol	18.32	20.0
Solyc02g085300.2.1	Tomato	cytosol	16.03	19.44
Solyc12g089130.1.1	Tomato	cytosol	16.79	18.88
Solyc09g098600.2.1	Tomato	cytosol	20.61	17.7
Solyc01g005280.2.1	Tomato	cytosol	16.03	17.5
Solyc04g072810.2.1	Tomato	cytosol	20.99	16.87
Solyc06g068800.2.1	Tomato	cytosol	17.94	15.21
Solyc09g075970.2.1	Tomato	cytosol	18.7	11.58

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.2	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom_sf	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	InterPro:IPR001251
InterPro:IPR036865	UniProt:K4BKB7	PFAM:PF00650	PFscan:PS50191	PANTHER:PTHR10174	PANTHER:PTHR10174:SF197
SMART:SM00516	SUPFAM:SSF46938	SUPFAM:SSF52087	EnsemblPlantsGene:Solyc03g112640.2	EnsemblPlants:Solyc03g112640.2.1	UniParc:UPI000276768E

Description

No Description!

Coordinates

chr3:+:63018422..63022325

Molecular Weight (calculated)

30497.9 Da

IEP (calculated)

9.233

GRAVY (calculated)

-0.331

Length

262 amino acids

Sequence
(BLAST)

001: MSFQLVLRPP LLGRHLVKAT PIVATGYSRL RIRNCLNMDP HKSQKLVLDV KERLKREYAD LPVGRNGRDD EEMILWFLKD RKFSVDDAVS KLHKAIRWRH
101: EFGVSDLSEE SVKNSAETGK AYVHDSFDVN GRPVLIVDAS KHFPQKQDPD EDEKLCVFLI EKALSRLPAG KQDILGIFDL RGFGTENADL KFLTFLFDVF
201: YYYYPRRVSQ VLFVDAPFVF KPLWQLVKPM LKQYASLVRF CSAKEVREEY FTEETLPASF RK

Best Arabidopsis Sequence Match ( AT5G63060.1 )
(BLAST)

001: MSIRFSSTIV AASVNFKSSK NLNINRSRNC RFSVRSCVSE SQHAHKLVLE VKERLAKDCT SLPLGKYGRD DEDMILWFLK DRRFSVDEAI GKLTKAIKWR
101: HEFKVDELSE DSIKAATDTG KAYVHGFLDV KGRPVVIVAP AKHIPGLLDP IEDEKLCVFL LEKALSKLPA GQHKILGIFD LRGFGSQNAD LKFLTFLFDV
201: FYYYYPSRLD EVLFVDAPFI FQPIWQFTKP LVKQYASLVK FCSAETVRKE YFTEETLPSN FRS

Arabidopsis Description

Sec14p-like phosphatidylinositol transfer family protein [Source:UniProtKB/TrEMBL;Acc:F4K975]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.