Factsheet for PGSC0003DMT400046785

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g112640.2.1	Tomato	plastid	94.66	94.66
VIT_17s0000g08850.t01	Wine grape	mitochondrion	66.41	66.92
KRH03256	Soybean	endoplasmic reticulum, plastid	64.89	64.89
KRH57102	Soybean	cytosol, plastid	64.89	64.89
Os02t0321500-01	Rice	mitochondrion	64.12	64.37
HORVU0Hr1G022240.10	Barley	mitochondrion	63.74	63.74
TraesCS7A01G460600.1	Wheat	mitochondrion, plastid	63.36	63.36
KXG19106	Sorghum	plastid	61.07	62.5
GSMUA_Achr3P14480_001	Banana	mitochondrion	61.83	61.83
CDY16746	Canola	plastid	59.54	61.42
CDX87279	Canola	plastid	59.54	61.42
Bra035864.1-P	Field mustard	plastid	59.54	61.42
AT5G63060.1	Thale cress	plastid	59.54	59.32
Zm00001d045573_P004	Maize	plastid	33.59	54.66
TraesCS7B01G361800.2	Wheat	mitochondrion, plastid	62.98	53.92
TraesCS7D01G448500.3	Wheat	mitochondrion, plastid	63.36	53.55
Zm00001d045574_P002	Maize	plastid	61.45	31.32
PGSC0003DMT400036745	Potato	cytosol	20.99	20.3
PGSC0003DMT400058639	Potato	cytosol	15.65	20.2
PGSC0003DMT400013200	Potato	cytosol	21.76	19.86
PGSC0003DMT400038571	Potato	cytosol	20.23	19.78
PGSC0003DMT400058687	Potato	cytosol	17.18	18.75
PGSC0003DMT400024527	Potato	cytosol	22.9	18.18
PGSC0003DMT400058685	Potato	cytosol	12.98	16.92
PGSC0003DMT400018571	Potato	cytosol	20.61	16.51
PGSC0003DMT400058682	Potato	cytosol	17.18	15.9
PGSC0003DMT400065724	Potato	cytosol	18.7	15.86
PGSC0003DMT400077340	Potato	cytosol	18.7	11.58

Protein Annotations

EntrezGene:102598031	Gene3D:3.40.525.10	MapMan:35.2	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom_sf
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536
InterPro:IPR001251	InterPro:IPR036865	UniProt:M1BJM0	PFAM:PF00650	EnsemblPlantsGene:PGSC0003DMG400018166	PGSC:PGSC0003DMG400018166
EnsemblPlants:PGSC0003DMT400046785	PFscan:PS50191	PANTHER:PTHR10174	PANTHER:PTHR10174:SF197	SMART:SM00516	SUPFAM:SSF46938
SUPFAM:SSF52087	UniParc:UPI0002960740	RefSeq:XP_006344431.1	:	:	:

Description

Transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400018166]

Coordinates

chr3:+:52438882..52443092

Molecular Weight (calculated)

30476.7 Da

IEP (calculated)

8.433

GRAVY (calculated)

-0.344

Length

262 amino acids

Sequence
(BLAST)

001: MSFQLVLRPP LLGHHLVKAT PLVATGYSTL RIRNCLNMDP QKSQKLVLDV KERLEREYTD LPVGRNGRDD EEMILWFLKD RKFSVDDAVS KLHKAIRWRH
101: DFGVSDLSEE SVKSSAETGK AYVHDNFDVN GRPVLIVDAS KHFPQKQDPD EDEKLCVFLI EKSLSRLPTG KQDILGIFDL RGFGTQNADL KFLTFLFDVF
201: YYYYPRRLSQ VLFVDAPFVF KPLWQLVKPM LKQYASLVRF CSAKEVREEY FTEDTLPASF RK

Best Arabidopsis Sequence Match ( AT5G63060.1 )
(BLAST)

001: MSIRFSSTIV AASVNFKSSK NLNINRSRNC RFSVRSCVSE SQHAHKLVLE VKERLAKDCT SLPLGKYGRD DEDMILWFLK DRRFSVDEAI GKLTKAIKWR
101: HEFKVDELSE DSIKAATDTG KAYVHGFLDV KGRPVVIVAP AKHIPGLLDP IEDEKLCVFL LEKALSKLPA GQHKILGIFD LRGFGSQNAD LKFLTFLFDV
201: FYYYYPSRLD EVLFVDAPFI FQPIWQFTKP LVKQYASLVK FCSAETVRKE YFTEETLPSN FRS

Arabidopsis Description

Sec14p-like phosphatidylinositol transfer family protein [Source:UniProtKB/TrEMBL;Acc:F4K975]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.