Factsheet for PGSC0003DMT400058682

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058687	Potato	cytosol	84.81	100.0
Solyc01g005280.2.1	Tomato	cytosol	80.21	94.58
PGSC0003DMT400058639	Potato	cytosol	63.6	88.67
PGSC0003DMT400058685	Potato	cytosol	52.3	73.63
VIT_01s0011g05850.t01	Wine grape	cytosol	56.18	65.43
KRH70361	Soybean	cytosol	56.89	65.18
CDY33739	Canola	cytosol	54.77	61.26
AT1G14820.3	Thale cress	cytosol	54.42	61.11
CDX81674	Canola	cytosol	52.65	61.07
CDY33738	Canola	cytosol	52.65	61.07
Bra026803.1-P	Field mustard	cytosol	54.77	61.02
Bra026185.1-P	Field mustard	cytosol	51.24	59.18
CDY51766	Canola	cytosol	51.24	59.18
CDY45292	Canola	cytosol	51.24	59.18
Bra026802.1-P	Field mustard	cytosol	43.11	58.94
CDX81673	Canola	endoplasmic reticulum, golgi	54.77	50.99
CDX81672	Canola	cytosol	55.48	40.89
PGSC0003DMT400036745	Potato	cytosol	29.68	31.0
PGSC0003DMT400065724	Potato	cytosol	31.8	29.13
PGSC0003DMT400013200	Potato	cytosol	22.61	22.3
PGSC0003DMT400038571	Potato	cytosol	19.79	20.9
PGSC0003DMT400024527	Potato	cytosol	21.91	18.79
PGSC0003DMT400046785	Potato	mitochondrion	15.9	17.18
PGSC0003DMT400018571	Potato	cytosol	18.73	16.21
PGSC0003DMT400077340	Potato	cytosol	16.25	10.87

Protein Annotations

EnsemblPlants:PGSC0003DMT400058682	EnsemblPlantsGene:PGSC0003DMG402022797	Gene3D:1.10.8.20	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom_sf
InterPro:IPR001251	InterPro:IPR036865	PANTHER:PTHR10174	PANTHER:PTHR10174:SF121	PFAM:PF00650	PFscan:PS50191
PGSC:PGSC0003DMG402022797	SMART:SM00516	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI000295271C	UniProt:M1C342
MapMan:35.2	:	:	:	:	:

Description

SEC14 cytosolic factor / phosphoglyceride transfer family protein [Source:PGSC_GENE;Acc:PGSC0003DMG402022797]

Coordinates

chr1:-:494246..497562

Molecular Weight (calculated)

32660.8 Da

IEP (calculated)

8.628

GRAVY (calculated)

-0.200

Length

283 amino acids

Sequence
(BLAST)

001: MDRNQEIALA KMRKSVEKPG SSTESYGEKT LMRFLIARSM NPEKAAKMFC QWKKWRAEMV PTGYITDSEV ADESAAEKVY LQGLSKNGYP VAIIKLNKHF
101: ASKDQVQFKK FVVHALDKTI ARCYFSVLLS CRSDICLFNE ARSNDGNFHL VLVQEMMITM NCLVSSFNGR EIGNEKLIAI LDLQNITYSN VDTRGLITGF
201: QFLQAYYPER LATCYLLHMP QFFVTVWRFI CRFLDKATQR KMRIVMSEEQ KQEFIREVGE DVLPEEYGGR AKLVLLQDVA VNY

Best Arabidopsis Sequence Match ( AT1G14820.1 )
(BLAST)

001: MVFVVVVSSE KGYDKPTLMR FLVARSMDPV KAAKMFVDWQ KWRASMVPPT GFIPESEVQD ELEFRKVCLQ GPTKSGHPLV LVITSKHFAS KDPANFKKFV
101: VYALDKTIAS GNNGKEVGGE KLVAVIDLAN ITYKNLDARG LITGFQFLQS YYPERLAKCY ILHMPGFFVT VWKFVCRFLE KATQEKIVIV TDGEEQRKFE
201: EEIGADALPE EYGGRAKLTA IQDVLLPQAA PVTLTNNNV

Arabidopsis Description

AT1G14820 protein [Source:UniProtKB/TrEMBL;Acc:B9DGS8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.