Factsheet for PGSC0003DMT400058639

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g005260.2.1	Tomato	cytosol	95.57	80.83
PGSC0003DMT400058687	Potato	cytosol	88.67	75.0
PGSC0003DMT400058685	Potato	cytosol	71.92	72.64
PGSC0003DMT400058682	Potato	cytosol	88.67	63.6
Bra026802.1-P	Field mustard	cytosol	61.58	60.39
VIT_01s0011g05850.t01	Wine grape	cytosol	67.98	56.79
KRH70361	Soybean	cytosol	66.5	54.66
Bra026803.1-P	Field mustard	cytosol	64.04	51.18
CDY33739	Canola	cytosol	63.55	50.99
CDY33738	Canola	cytosol	61.08	50.82
CDX81674	Canola	cytosol	60.59	50.41
Bra026185.1-P	Field mustard	cytosol	59.61	49.39
CDY51766	Canola	cytosol	59.61	49.39
CDY45292	Canola	cytosol	59.61	49.39
AT1G14820.3	Thale cress	cytosol	61.08	49.21
CDX81673	Canola	endoplasmic reticulum, golgi	63.55	42.43
CDX81672	Canola	cytosol	63.55	33.59
PGSC0003DMT400036745	Potato	cytosol	33.99	25.46
PGSC0003DMT400065724	Potato	cytosol	34.98	22.98
PGSC0003DMT400013200	Potato	cytosol	23.15	16.38
PGSC0003DMT400046785	Potato	mitochondrion	20.2	15.65
PGSC0003DMT400038571	Potato	cytosol	20.2	15.3
PGSC0003DMT400024527	Potato	cytosol	24.14	14.85
PGSC0003DMT400018571	Potato	cytosol	19.21	11.93
PGSC0003DMT400077340	Potato	cytosol	18.72	8.98

Protein Annotations

EnsemblPlants:PGSC0003DMT400058639	EnsemblPlantsGene:PGSC0003DMG400022783	Gene3D:1.10.8.20	Gene3D:3.40.525.10	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf
InterPro:CRAL/TRIO_N_dom_sf	InterPro:IPR001251	InterPro:IPR036865	PANTHER:PTHR10174	PANTHER:PTHR10174:SF121	PFAM:PF00650
PGSC:PGSC0003DMG400022783	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI0002969C07	UniProt:M1C316	MapMan:35.2

Description

SEC14 cytosolic factor / phosphoglyceride transfer family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022783]

Coordinates

chr1:+:483342..487597

Molecular Weight (calculated)

23142.0 Da

IEP (calculated)

8.923

GRAVY (calculated)

-0.362

Length

203 amino acids

Sequence
(BLAST)

001: MDRNQEIALT QMRKSVEKLG SSTESYGEKT LMRFLIARSM NPEKAAKMFC QWKKWRAEIV PLGYITDSEV AHELAAEKIY LQGLSKNGHP VVMIKSNKHF
101: PSKDQVQFKK FVVHLLDKTI ASSFNGRETG NEKLIGIVDL QDITYSNADL RGLITGFQFL QVRIVTSEEQ KQEFIREVGE DVLPEEYGGR AKLVLLQNVA
201: VNY

Best Arabidopsis Sequence Match ( AT1G14820.1 )
(BLAST)

001: MVFVVVVSSE KGYDKPTLMR FLVARSMDPV KAAKMFVDWQ KWRASMVPPT GFIPESEVQD ELEFRKVCLQ GPTKSGHPLV LVITSKHFAS KDPANFKKFV
101: VYALDKTIAS GNNGKEVGGE KLVAVIDLAN ITYKNLDARG LITGFQFLQS YYPERLAKCY ILHMPGFFVT VWKFVCRFLE KATQEKIVIV TDGEEQRKFE
201: EEIGADALPE EYGGRAKLTA IQDVLLPQAA PVTLTNNNV

Arabidopsis Description

AT1G14820 protein [Source:UniProtKB/TrEMBL;Acc:B9DGS8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.