Factsheet for PGSC0003DMT400058685

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058639	Potato	cytosol	72.64	71.92
Solyc01g005270.2.1	Tomato	cytosol	81.59	68.33
PGSC0003DMT400058687	Potato	cytosol	73.63	61.67
PGSC0003DMT400058682	Potato	cytosol	73.63	52.3
VIT_01s0011g05850.t01	Wine grape	cytosol	62.69	51.85
Bra026802.1-P	Field mustard	cytosol	52.24	50.72
KRH70361	Soybean	cytosol	59.2	48.18
Bra026803.1-P	Field mustard	cytosol	57.21	45.28
CDY33739	Canola	cytosol	56.72	45.06
CDY33738	Canola	cytosol	53.23	43.85
AT1G14820.3	Thale cress	cytosol	54.73	43.65
Bra026185.1-P	Field mustard	cytosol	52.74	43.27
CDY51766	Canola	cytosol	52.74	43.27
CDY45292	Canola	cytosol	52.74	43.27
CDX81674	Canola	cytosol	52.24	43.03
CDX81673	Canola	endoplasmic reticulum, golgi	56.22	37.17
CDX81672	Canola	cytosol	56.22	29.43
PGSC0003DMT400036745	Potato	cytosol	34.33	25.46
PGSC0003DMT400065724	Potato	cytosol	34.83	22.65
PGSC0003DMT400013200	Potato	cytosol	18.91	13.24
PGSC0003DMT400046785	Potato	mitochondrion	16.92	12.98
PGSC0003DMT400024527	Potato	cytosol	20.4	12.42
PGSC0003DMT400038571	Potato	cytosol	16.42	12.31
PGSC0003DMT400018571	Potato	cytosol	15.92	9.79
PGSC0003DMT400077340	Potato	cytosol	18.91	8.98

Protein Annotations

EnsemblPlants:PGSC0003DMT400058685	EnsemblPlantsGene:PGSC0003DMG403022797	Gene3D:1.10.8.20	Gene3D:3.40.525.10	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf
InterPro:CRAL/TRIO_N_dom_sf	InterPro:IPR001251	InterPro:IPR036865	PANTHER:PTHR10174	PANTHER:PTHR10174:SF121	PFAM:PF00650
PGSC:PGSC0003DMG403022797	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI000295F0F1	UniProt:M1C343	MapMan:35.2

Description

Aspartate semialdehyde dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG403022797]

Coordinates

chr1:-:489323..493110

Molecular Weight (calculated)

23028.2 Da

IEP (calculated)

9.932

GRAVY (calculated)

-0.182

Length

201 amino acids

Sequence
(BLAST)

001: MDRNQEIALT QMRKSVEKLG SSTESYGEKT LMRFLIARSM DPEKAAKMFC QWKKWRAEMV PLGYISDSEV ANELAAEKLY LQGLSKSGHP IVIVKVNKHF
101: PSKDQVQFKK FVIHLLDKTI ASSFKGREIG NEKLIAILDL KNITYSNVDT RGLITGFQFL QVTHLPFYSM QTISTETHIA SVMKRYINLV PWTTLYVSCQ
201: L

Best Arabidopsis Sequence Match ( AT1G14820.1 )
(BLAST)

001: MVFVVVVSSE KGYDKPTLMR FLVARSMDPV KAAKMFVDWQ KWRASMVPPT GFIPESEVQD ELEFRKVCLQ GPTKSGHPLV LVITSKHFAS KDPANFKKFV
101: VYALDKTIAS GNNGKEVGGE KLVAVIDLAN ITYKNLDARG LITGFQFLQS YYPERLAKCY ILHMPGFFVT VWKFVCRFLE KATQEKIVIV TDGEEQRKFE
201: EEIGADALPE EYGGRAKLTA IQDVLLPQAA PVTLTNNNV

Arabidopsis Description

AT1G14820 protein [Source:UniProtKB/TrEMBL;Acc:B9DGS8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.