Factsheet for PGSC0003DMT400058687

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g005280.2.1	Tomato	cytosol	94.58	94.58
PGSC0003DMT400058639	Potato	cytosol	75.0	88.67
PGSC0003DMT400058682	Potato	cytosol	100.0	84.81
PGSC0003DMT400058685	Potato	cytosol	61.67	73.63
VIT_01s0011g05850.t01	Wine grape	cytosol	66.25	65.43
KRH70361	Soybean	cytosol	67.08	65.18
CDY33739	Canola	cytosol	64.58	61.26
AT1G14820.3	Thale cress	cytosol	64.17	61.11
CDX81674	Canola	cytosol	62.08	61.07
CDY33738	Canola	cytosol	62.08	61.07
Bra026803.1-P	Field mustard	cytosol	64.58	61.02
Bra026185.1-P	Field mustard	cytosol	60.42	59.18
CDY51766	Canola	cytosol	60.42	59.18
CDY45292	Canola	cytosol	60.42	59.18
Bra026802.1-P	Field mustard	cytosol	50.83	58.94
CDX81673	Canola	endoplasmic reticulum, golgi	64.58	50.99
CDX81672	Canola	cytosol	65.42	40.89
PGSC0003DMT400036745	Potato	cytosol	35.0	31.0
PGSC0003DMT400065724	Potato	cytosol	37.5	29.13
PGSC0003DMT400013200	Potato	cytosol	26.67	22.3
PGSC0003DMT400038571	Potato	cytosol	23.33	20.9
PGSC0003DMT400024527	Potato	cytosol	25.83	18.79
PGSC0003DMT400046785	Potato	mitochondrion	18.75	17.18
PGSC0003DMT400018571	Potato	cytosol	22.08	16.21
PGSC0003DMT400077340	Potato	cytosol	19.17	10.87

Protein Annotations

Gene3D:1.10.8.20	EntrezGene:102594752	EntrezGene:102595088	EntrezGene:102595628	Gene3D:3.40.525.10	MapMan:35.2
InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom_sf	InterPro:IPR001251	InterPro:IPR036865	UniProt:M1C345
PFAM:PF00650	EnsemblPlantsGene:PGSC0003DMG401022797	PGSC:PGSC0003DMG401022797	EnsemblPlants:PGSC0003DMT400058687	PFscan:PS50191	PANTHER:PTHR10174
PANTHER:PTHR10174:SF121	SMART:SM00516	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI00029554E9	RefSeq:XP_006364046.1
RefSeq:XP_006364047.1	:	:	:	:	:

Description

SEC14 cytosolic factor / phosphoglyceride transfer family protein [Source:PGSC_GENE;Acc:PGSC0003DMG401022797]

Coordinates

chr1:-:493987..498280

Molecular Weight (calculated)

27691.6 Da

IEP (calculated)

9.400

GRAVY (calculated)

-0.322

Length

240 amino acids

Sequence
(BLAST)

001: MDRNQEIALA KMRKSVEKPG SSTESYGEKT LMRFLIARSM NPEKAAKMFC QWKKWRAEMV PTGYITDSEV ADESAAEKVY LQGLSKNGYP VAIIKLNKHF
101: ASKDQVQFKK FVVHALDKTI ASSFNGREIG NEKLIAILDL QNITYSNVDT RGLITGFQFL QAYYPERLAT CYLLHMPQFF VTVWRFICRF LDKATQRKMR
201: IVMSEEQKQE FIREVGEDVL PEEYGGRAKL VLLQDVAVNY

Best Arabidopsis Sequence Match ( AT1G14820.3 )
(BLAST)

001: MEESQELALT QLRKSVEKLS SSTEGYDKPT LMRFLVARSM DPVKAAKMFV DWQKWRASMV PPTGFIPESE VQDELEFRKV CLQGPTKSGH PLVLVITSKH
101: FASKDPANFK KFVVYALDKT IASGNNGKEV GGEKLVAVID LANITYKNLD ARGLITGFQF LQSYYPERLA KCYILHMPGF FVTVWKFVCR FLEKATQEKI
201: VIVTDGEEQR KFEEEIGADA LPEEYGGRAK LTAIQDVLLP QAAPVTLTNN NV

Arabidopsis Description

AT1G14820 protein [Source:UniProtKB/TrEMBL;Acc:B9DGS8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.