Factsheet for PGSC0003DMT400077340

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g075970.2.1	Tomato	cytosol	95.98	95.98
VIT_05s0020g03350.t01	Wine grape	cytosol	75.18	75.18
KRH35529	Soybean	cytosol	69.03	72.28
KRG91288	Soybean	cytosol	68.09	71.29
Bra039949.1-P	Field mustard	cytosol	57.45	60.6
AT3G22410.1	Thale cress	cytosol	56.26	59.5
GSMUA_Achr3P29630_001	Banana	cytosol	59.1	58.41
GSMUA_Achr7P27040_001	Banana	cytosol	59.57	57.93
Os03t0219100-01	Rice	cytosol	59.34	57.31
GSMUA_Achr6P25200_001	Banana	cytosol	56.97	56.57
EER95261	Sorghum	cytosol	58.63	55.86
Zm00001d028231_P003	Maize	cytosol	58.87	55.09
Bra023828.1-P	Field mustard	nucleus	52.72	55.06
CDY38325	Canola	cytosol	47.99	54.72
Zm00001d048066_P001	Maize	cytosol	56.5	54.69
CDY71148	Canola	cytosol, mitochondrion, nucleus, plastid	40.19	53.46
TraesCS4D01G242900.1	Wheat	cytosol	56.5	53.23
TraesCS4B01G243300.1	Wheat	cytosol	56.26	52.65
TraesCS4A01G065900.1	Wheat	cytosol	56.26	51.85
GSMUA_Achr5P08620_001	Banana	nucleus	56.5	51.51
HORVU4Hr1G067410.4	Barley	plastid	51.3	43.49
CDY10638	Canola	nucleus	35.93	40.43
PGSC0003DMT400013200	Potato	cytosol	16.08	23.69
PGSC0003DMT400038571	Potato	cytosol	14.42	22.76
PGSC0003DMT400036745	Potato	cytosol	14.18	22.14
PGSC0003DMT400024527	Potato	cytosol	17.26	22.12
PGSC0003DMT400065724	Potato	cytosol	14.42	19.74
PGSC0003DMT400058687	Potato	cytosol	10.87	19.17
PGSC0003DMT400018571	Potato	cytosol	14.66	18.96
PGSC0003DMT400058685	Potato	cytosol	8.98	18.91
PGSC0003DMT400058639	Potato	cytosol	8.98	18.72
PGSC0003DMT400046785	Potato	mitochondrion	11.58	18.7
PGSC0003DMT400058682	Potato	cytosol	10.87	16.25

Protein Annotations

EnsemblPlants:PGSC0003DMT400077340	EnsemblPlantsGene:PGSC0003DMG400030080	EntrezGene:102582807	Gene3D:3.40.525.10	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf
InterPro:CRAL/TRIO_N_dom_sf	InterPro:IPR001251	InterPro:IPR036865	ncoils:Coil	PANTHER:PTHR10174	PANTHER:PTHR10174:SF132
PFAM:PF00650	PFscan:PS50191	PGSC:PGSC0003DMG400030080	RefSeq:XP_006360805.1	SEG:seg	SMART:SM00516
SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI000294D3E8	UniProt:M1CY88	MapMan:35.2	:

Description

Transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400030080]

Coordinates

chr9:-:53596660..53600687

Molecular Weight (calculated)

48115.1 Da

IEP (calculated)

10.301

GRAVY (calculated)

-0.336

Length

423 amino acids

Sequence
(BLAST)

001: MGKKEQINNE KHKDIERVQA VLQLLKKQAP LSVKQEKLCN NACVERFLKV KGENVKKAAK HLRNCLNWRD SLGIDHLIAD EFSAELAEGL AYVSGHDDES
101: RPVLIFRIKQ DYQKFHSQKL FTRLLVFTLE VAIQTMAKSV EQFVILFDAS FFRSASAFMN ILLASLKIIA DYYPGRLHKA FVIDPPSLFS YLWKGVKTFV
201: DLAPLTMVVS SLDFEESLEF NDFTAYPRAA SLRFNPSSIS SDGKIGSCSS SRFSFTVSHH FDSVKPWYLS LTDTSSAKVG PTTNMGPAIS PLNARSYSFA
301: SPIDRTPRGN NNMGPMKKSF FPSTPLPTKS KDMVDHSEIH HPRAMRPSFF QSPAMFFKKD GGKGHTISRV DKCRESFQPF LKFYRRPYDE MIYRSKMRPP
401: LGGLISIVSP HIRRRHMSAS QRF

Best Arabidopsis Sequence Match ( AT1G05370.1 )
(BLAST)

001: MGKKEQKDHH SVVESDDKVE AVLHLLRKHS PLTLKQEKFC NRACVGRFLR IKGDNVKKAA KQLRSCLSWR SSLGIESLIA DEFTAELAEG LAYVAGLDDE
101: CRPVLVFRIK QDYQKLHTQK QLTRLVVFTL EVAISTMSRN VEQFVILFDA SFFKSASAFM NILVTTLKIV AEYYPCRLFK TFVIDPPSLF SYLWKGIRTF
201: VDLSTATMIV SMQDFQDSFD YDDFSSSYPS RVSSLRFDTS SLKSTDKIGS CASSRFAFTV SRDGLDTVKP WCLTLTDTSS TKLGHNTGAY ISPLNARSFS
301: FASPAARSEP FGGPRRSFFA STPMPARTTD RHSIGTLRDP RIPRPSFFQS PAIFFRRESH VSKSEKPRDS FVQFLKFYRR PYDEMTYRSK MRPPLGGLVS
401: IVSTQIRRRH VSLSQRF

Arabidopsis Description

Sec14p-like phosphatidylinositol transfer family protein [Source:UniProtKB/TrEMBL;Acc:F4I8Q8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.