Factsheet for VIT_05s0020g03350.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35529	Soybean	cytosol	75.41	78.96
KRG91288	Soybean	cytosol	75.18	78.71
PGSC0003DMT400077340	Potato	cytosol	75.18	75.18
Solyc09g075970.2.1	Tomato	cytosol	74.23	74.23
CDY64658	Canola	cytosol	56.5	70.09
AT1G05370.1	Thale cress	cytosol	67.85	68.82
Bra015421.1-P	Field mustard	cytosol	65.25	68.66
CDY10026	Canola	cytosol	66.43	67.55
CDY10103	Canola	extracellular	42.79	67.29
Bra032465.1-P	Field mustard	cytosol	65.96	67.07
CDY59787	Canola	cytosol	65.72	66.83
GSMUA_Achr3P29630_001	Banana	cytosol	63.83	63.08
GSMUA_Achr7P27040_001	Banana	cytosol	63.59	61.84
GSMUA_Achr6P25200_001	Banana	cytosol	62.17	61.74
Os03t0219100-01	Rice	cytosol	62.41	60.27
EER95261	Sorghum	cytosol	60.05	57.21
Zm00001d048066_P001	Maize	cytosol	58.63	56.75
GSMUA_Achr5P08620_001	Banana	nucleus	61.7	56.25
Zm00001d028231_P003	Maize	cytosol	60.05	56.19
TraesCS4D01G242900.1	Wheat	cytosol	58.16	54.79
TraesCS4B01G243300.1	Wheat	cytosol	57.68	53.98
TraesCS4A01G065900.1	Wheat	cytosol	57.68	53.16
HORVU4Hr1G067410.4	Barley	plastid	52.25	44.29
VIT_01s0150g00170.t01	Wine grape	cytosol	15.37	26.42
VIT_17s0000g00130.t01	Wine grape	cytosol	15.6	25.78
VIT_04s0023g01720.t01	Wine grape	cytosol, mitochondrion	14.66	21.38
VIT_01s0011g05850.t01	Wine grape	cytosol	12.06	20.99
VIT_18s0001g12420.t01	Wine grape	cytosol	15.6	20.95
VIT_08s0056g00730.t01	Wine grape	cytosol	15.6	20.82
VIT_18s0001g05080.t01	Wine grape	nucleus	17.26	20.22
VIT_17s0000g08850.t01	Wine grape	mitochondrion	11.11	18.08

Protein Annotations

EntrezGene:100247799	wikigene:100247799	Gene3D:3.40.525.10	MapMan:35.2	ProteinID:CBI26242	ProteinID:CBI26242.3
InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom_sf	UniProt:D7T6X1	EMBL:FN595749	InterPro:IPR001251
InterPro:IPR036865	EntrezGene:LOC100247799	wikigene:LOC100247799	PFAM:PF00650	PFscan:PS50191	PANTHER:PTHR10174
PANTHER:PTHR10174:SF132	SMART:SM00516	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI00015C7793	ArrayExpress:VIT_05s0020g03350
EnsemblPlantsGene:VIT_05s0020g03350	EnsemblPlants:VIT_05s0020g03350.t01	RefSeq:XP_002282170	RefSeq:XP_002282170.1	SEG:seg	:

Description

No Description!

Coordinates

chr5:-:5108616..5111477

Molecular Weight (calculated)

47718.5 Da

IEP (calculated)

10.407

GRAVY (calculated)

-0.289

Length

423 amino acids

Sequence
(BLAST)

001: MGKKDQKEKE RVEAVLELLR KQAPLTVKQE KFCNNACVER FLRAKGDSVR KAAKHLRACL SWRESIGTEH LIADEFSAEL AEGVAYVAGH DEESRPVMIF
101: RIKQDYQKFH SQKLFTRLLV FTLEVAIQTM PRNVEQFVLL FDAGFFRSAS AFMNLLLTAL KIVAEYYPGR LHKAFVIDPP SLFSYLWKGV RPFLELSPAT
201: MVVSSLDFEE SLEFNDFSSY PRASSLRFDP SSIPSTAKIG SCSSSRFSFT VSHHFDSLKP WYLSLADTSG SKVGPTSPSP SMLGPALISP LNARSLSFAS
301: PAARTPRGGI YGGSASRPAK KSLFASTPLP ERTNYGKNDA MSINHPRTPR PSFLQSPALF FRKECHVSRA DKSRESFLPF LKFYRRPYDE MIYRSKMRPP
401: LGGLISIVSP QLKRRHMSVS QRF

Best Arabidopsis Sequence Match ( AT1G05370.1 )
(BLAST)

001: MGKKEQKDHH SVVESDDKVE AVLHLLRKHS PLTLKQEKFC NRACVGRFLR IKGDNVKKAA KQLRSCLSWR SSLGIESLIA DEFTAELAEG LAYVAGLDDE
101: CRPVLVFRIK QDYQKLHTQK QLTRLVVFTL EVAISTMSRN VEQFVILFDA SFFKSASAFM NILVTTLKIV AEYYPCRLFK TFVIDPPSLF SYLWKGIRTF
201: VDLSTATMIV SMQDFQDSFD YDDFSSSYPS RVSSLRFDTS SLKSTDKIGS CASSRFAFTV SRDGLDTVKP WCLTLTDTSS TKLGHNTGAY ISPLNARSFS
301: FASPAARSEP FGGPRRSFFA STPMPARTTD RHSIGTLRDP RIPRPSFFQS PAIFFRRESH VSKSEKPRDS FVQFLKFYRR PYDEMTYRSK MRPPLGGLVS
401: IVSTQIRRRH VSLSQRF

Arabidopsis Description

Sec14p-like phosphatidylinositol transfer family protein [Source:UniProtKB/TrEMBL;Acc:F4I8Q8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.