Factsheet for VIT_18s0001g12420.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0023g01720.t01	Wine grape	cytosol, mitochondrion	64.13	69.66
GSMUA_AchrUn_...	Banana	cytosol	60.32	66.67
GSMUA_Achr4P03190_001	Banana	cytosol	56.51	63.57
GSMUA_Achr8P26360_001	Banana	cytosol	57.46	60.94
KXG37682	Sorghum	cytosol	51.75	55.63
EER93541	Sorghum	cytosol	51.75	54.88
Os03t0724100-01	Rice	cytosol	52.06	54.85
HORVU4Hr1G074380.1	Barley	cytosol	24.13	54.68
HORVU4Hr1G005090.2	Barley	cytosol	22.22	53.85
TraesCS4A01G259700.1	Wheat	cytosol	49.84	53.77
TraesCS4D01G055200.1	Wheat	cytosol	49.84	53.77
HORVU4Hr1G009210.2	Barley	cytosol	49.52	53.42
TraesCS4B01G055000.1	Wheat	cytosol	49.21	53.08
TraesCS4D01G055400.1	Wheat	cytosol	48.57	52.4
HORVU4Hr1G009190.1	Barley	cytosol	48.57	52.4
TraesCS4A01G259600.1	Wheat	cytosol	48.57	52.4
TraesCS4B01G055100.1	Wheat	cytosol	46.98	52.3
Zm00001d033836_P001	Maize	nucleus	48.89	52.2
TraesCS4D01G055300.1	Wheat	cytosol	48.25	52.05
HORVU6Hr1G021650.1	Barley	cytosol, mitochondrion, nucleus	22.86	51.8
HORVU4Hr1G009310.1	Barley	cytosol	47.94	51.71
HORVU5Hr1G114590.3	Barley	mitochondrion	20.0	51.64
TraesCS4A01G259500.1	Wheat	cytosol	47.62	51.37
KXG37681	Sorghum	cytosol	49.84	50.81
TraesCS4B01G055200.1	Wheat	cytosol	46.67	50.34
TraesCS4D01G055100.1	Wheat	cytosol	33.02	49.76
TraesCS7B01G089700.1	Wheat	cytosol	43.81	48.76
HORVU3Hr1G080050.1	Barley	cytosol, mitochondrion, plastid	23.49	47.44
HORVU5Hr1G020290.3	Barley	plastid	22.54	46.41
Zm00001d033837_P001	Maize	plastid	40.63	42.95
VIT_08s0056g00730.t01	Wine grape	cytosol	39.68	39.43
VIT_18s0001g05080.t01	Wine grape	nucleus	43.17	37.67
VIT_01s0150g00170.t01	Wine grape	cytosol	20.63	26.42
VIT_17s0000g00130.t01	Wine grape	cytosol	20.63	25.39
VIT_01s0011g05850.t01	Wine grape	cytosol	18.1	23.46
VIT_17s0000g08850.t01	Wine grape	mitochondrion	18.73	22.69
VIT_05s0020g03350.t01	Wine grape	cytosol	20.95	15.6

Protein Annotations

EntrezGene:100262592	wikigene:100262592	Gene3D:3.40.525.10	MapMan:35.2	ProteinID:CCB45942	ProteinID:CCB45942.1
InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	UniProt:F6H1I3	EMBL:FN595227
InterPro:IPR001251	InterPro:IPR036865	EntrezGene:LOC100262592	wikigene:LOC100262592	PFAM:PF00650	PFAM:PF03765
PFscan:PS50191	PANTHER:PTHR10174	PANTHER:PTHR10174:SF206	SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938
SUPFAM:SSF52087	TIGR:TC56192	UniParc:UPI0002108FBB	ArrayExpress:VIT_18s0001g12420	EnsemblPlantsGene:VIT_18s0001g12420	EnsemblPlants:VIT_18s0001g12420.t01
unigene:Vvi.8343	RefSeq:XP_002282705	RefSeq:XP_002282705.1	RefSeq:XP_002282709	RefSeq:XP_002282709.1	:

Description

No Description!

Coordinates

chr18:+:10641002..10646605

Molecular Weight (calculated)

36339.1 Da

IEP (calculated)

6.915

GRAVY (calculated)

-0.536

Length

315 amino acids

Sequence
(BLAST)

001: MISEEVSVFL DAHLSQQKYP TMLRLWGKSH HDQEKDLQKS DSKVHELKAA LGPLSGRSLQ YCNDACLKRY LEARNWNVDK SKKMLEETLT WRSTYKPEEI
101: RWSDVATEGE TGKVFRANFH DRHGRTVLIL RPGKQNTTAL DNQVRHLVYL LENAILNLPE DQEQMVWLID FTGMTFSNSV PIKTARDTIN ILQNHYPERL
201: FLAFLYSPPR IFEAFWKAVK YLLDAKTFQK VKFVYPKDKN SVELMSSYFD VENLPTDFGG KATMNYDHEE FSRLMTQDDV KSANLWGFGD KLQHVSNGHS
301: VAEVSPEPAC LAPAS

Best Arabidopsis Sequence Match ( AT1G75170.1 )
(BLAST)

001: MFRWKNSSQT EQEQKEAALR EAKMKELKTL IGQLSGRNSL YCSDACLKRY LEARNWNVGK AKKMLEETLK WRSSFKPEEI RWNEVSGEGE TGKVYKAGFH
101: DRHGRTVLIL RPGLQNTKSL ENQMKHLVYL IENAILNLPE DQEQMSWLID FTGWSMSTSV PIKSARETIN ILQNHYPERL AVAFLYNPPR LFEAFWKIVK
201: YFIDAKTFVK VKFVYPKNSE SVELMSTFFD EENLPTEFGG KALLQYNYEE FSKQMNQDDV KTANFWGLGH SNNNQLHASN GFSGAEIAPE PIQNHP

Arabidopsis Description

Sec14p-like phosphatidylinositol transfer family protein [Source:UniProtKB/TrEMBL;Acc:Q9FRK8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.