Factsheet for Bra023828.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71148	Canola	cytosol, mitochondrion, nucleus, plastid	77.53	98.74
Bra039949.1-P	Field mustard	cytosol	81.98	82.79
AT3G22410.1	Thale cress	cytosol	78.77	79.75
KRG91288	Soybean	cytosol	57.53	57.67
KRH35529	Soybean	cytosol	57.28	57.43
Bra032465.1-P	Field mustard	cytosol	57.78	56.25
Bra015421.1-P	Field mustard	cytosol	54.32	54.73
Solyc09g075970.2.1	Tomato	cytosol	55.56	53.19
PGSC0003DMT400077340	Potato	cytosol	55.06	52.72
GSMUA_Achr6P25200_001	Banana	cytosol	50.62	48.12
GSMUA_Achr7P27040_001	Banana	cytosol	51.6	48.05
GSMUA_Achr3P29630_001	Banana	cytosol	50.62	47.9
Os03t0219100-01	Rice	cytosol	49.14	45.43
GSMUA_Achr5P08620_001	Banana	nucleus	50.62	44.18
EER95261	Sorghum	cytosol	47.41	43.24
TraesCS4D01G242900.1	Wheat	cytosol	47.41	42.76
TraesCS4B01G243300.1	Wheat	cytosol	47.41	42.48
TraesCS4A01G065900.1	Wheat	cytosol	47.9	42.27
Zm00001d028231_P003	Maize	cytosol	46.91	42.04
Zm00001d048066_P001	Maize	cytosol	45.19	41.88
HORVU4Hr1G067410.4	Barley	plastid	42.96	34.87
Bra012311.1-P	Field mustard	cytosol	17.53	23.28
Bra032645.1-P	Field mustard	cytosol	13.09	22.94
Bra033247.1-P	Field mustard	cytosol	14.07	22.35
Bra000655.1-P	Field mustard	cytosol	17.04	22.33
Bra031370.1-P	Field mustard	cytosol	16.79	21.12
Bra026185.1-P	Field mustard	cytosol	12.59	20.82
Bra010566.1-P	Field mustard	cytosol	14.57	20.14
Bra011696.1-P	Field mustard	nucleus	14.07	19.66
Bra017768.1-P	Field mustard	cytosol	13.83	19.38
Bra035864.1-P	Field mustard	plastid	12.1	19.29
Bra026803.1-P	Field mustard	cytosol	11.6	18.5
Bra026802.1-P	Field mustard	cytosol	8.64	16.91
Bra015863.1-P	Field mustard	cytosol	14.57	15.36

Protein Annotations

EnsemblPlants:Bra023828.1	EnsemblPlants:Bra023828.1-P	EnsemblPlantsGene:Bra023828	Gene3D:3.40.525.10	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf
InterPro:CRAL/TRIO_N_dom_sf	InterPro:IPR001251	InterPro:IPR036865	PANTHER:PTHR10174	PANTHER:PTHR10174:SF132	PFAM:PF00650
PFscan:PS50191	SEG:seg	SMART:SM00516	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI0002544352
UniProt:M4E4X4	MapMan:35.2	:	:	:	:

Description

AT3G22410 (E=2e-157) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05370.1); Has 1032 Blast hits to 1032 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 245; Fungi - 243; Plants - 390; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink).

Coordinates

chrA01:+:20239550..20242050

Molecular Weight (calculated)

45236.9 Da

IEP (calculated)

10.439

GRAVY (calculated)

-0.304

Length

405 amino acids

Sequence
(BLAST)

001: MGKKDEKVET VLHLLRQQSP LTLNQEKFCN KECVERFLEG KGNNVKRAAK QLLSCLSWRQ SIEIGAEEFA TELSDGVAYI AGHDGDVRPV IIFRFKNDYQ
101: KLRTQKQFLR LVAFTMETAI SSMSRNAERR VVLLFDASFF RSSSAFANLL LPTLKIIGDN YPCRLYKAFI IDPPSFFPYI WKGVRPFVEL STLTTVISSL
201: DYDEQLDISH VSLASSSSSS SSCPRSASLR FDASSNKSAV ASGSASSRFA FTVSHNSLKP WYLSFTDTSP LNAAVSTAAS KVSPISSRSL SFASPAARGL
301: IDARQPACMR KSVFPSTPLQ EKTKTETYRK TPRPSFFQSP AMFFRGGKNV GGGEKSSREA FVPYLKFYRR PYDETAYRSK LRGPRGFVSV VSSHVRCRHA
401: SLSQR

Best Arabidopsis Sequence Match ( AT3G22410.1 )
(BLAST)

001: MGKKDEKVEA VLRLVKKQSP LTFKQEKFCN RECVERFLKV KGDNVKKAAK QLSSCLSWRQ NFDIERLGAE EFSTELSDGV AYISGHDRES RPVIIFRFKH
101: DYQKLHTQKQ FTRLVAFTIE TAISSMSRNT EQSFVLLFDA SFFRSSSAFA NLLLATLKII ADNYPCRLYK AFIIDPPSFF SYLWKGVRPF VELSTATMIL
201: SSLDYDEPLD ITHVSSNPRS TSLRFDASSI KSTASIGSAS SRFAFTVSQN SLKPWYLSFT DTSPYNPAVS SSAAAPVSPL SARSLPFASP AVRGFKDAKP
301: AACRKSLFPS TPLPEKTKTV SYRKTPRPSF FQSPAMFFRR ENNVGGGGEK SREAFVPYLK FYRRPYDETA YRSKLRGPRG FLSVVSSHRR SRHVSLSQRF

Arabidopsis Description

Sec14p-like phosphatidylinositol transfer family protein [Source:UniProtKB/TrEMBL;Acc:Q9LUV9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.