CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16746	Canola	plastid	98.03	98.03
AT5G63060.1	Thale cress	plastid	89.76	86.69
VIT_17s0000g08850.t01	Wine grape	mitochondrion	64.96	63.46
Solyc03g112640.2.1	Tomato	plastid	62.2	60.31
PGSC0003DMT400046785	Potato	mitochondrion	61.42	59.54
TraesCS7A01G460600.1	Wheat	mitochondrion, plastid	60.24	58.4
KRH03256	Soybean	endoplasmic reticulum, plastid	60.24	58.4
HORVU0Hr1G022240.10	Barley	mitochondrion	60.24	58.4
KXG19106	Sorghum	plastid	58.66	58.2
KRH57102	Soybean	cytosol, plastid	59.84	58.02
Os02t0321500-01	Rice	mitochondrion	59.45	57.85
GSMUA_Achr3P14480_001	Banana	mitochondrion	58.27	56.49
Zm00001d045573_P004	Maize	plastid	33.07	52.17
TraesCS7D01G448500.3	Wheat	mitochondrion, plastid	59.84	49.03
TraesCS7B01G361800.2	Wheat	mitochondrion, plastid	59.06	49.02
CDY38239	Canola	cytosol	7.87	31.75
Zm00001d045574_P002	Maize	plastid	57.48	28.4
CDX75583	Canola	cytosol	12.99	21.02
CDY38020	Canola	cytosol	21.65	20.99
CDX73146	Canola	cytosol	23.23	20.42
CDY15164	Canola	cytosol	20.47	20.39
CDX90047	Canola	cytosol	20.47	20.39
CDX90694	Canola	cytosol	24.41	20.06
CDY00428	Canola	cytosol	24.02	20.0
CDY56380	Canola	cytosol	24.02	20.0
CDY65854	Canola	nucleus	22.44	19.72
CDY24776	Canola	cytosol	22.44	19.45
CDY51766	Canola	cytosol	18.5	19.18
CDY35466	Canola	cytosol	22.05	19.11
CDY05023	Canola	cytosol	23.62	19.11
CDX72592	Canola	cytosol	21.65	19.03
CDY42697	Canola	cytosol	21.65	19.03
CDY45292	Canola	cytosol	18.11	18.78
CDY21345	Canola	cytosol	23.23	18.32
CDX81674	Canola	cytosol	16.93	17.62
CDY33738	Canola	cytosol	16.93	17.62
CDY33739	Canola	cytosol	16.93	17.0
CDY12289	Canola	cytosol	13.39	16.11
CDY45413	Canola	cytosol	23.62	15.58
CDX81673	Canola	endoplasmic reticulum, golgi	16.93	14.14
CDY38240	Canola	peroxisome	7.48	13.1
CDY10638	Canola	nucleus	18.5	12.5
CDY59787	Canola	cytosol	19.68	12.02
CDY10026	Canola	cytosol	19.68	12.02
CDX81672	Canola	cytosol	18.11	11.98
CDY64658	Canola	cytosol	14.57	10.85
CDY38325	Canola	cytosol	14.96	10.24
CDY71148	Canola	cytosol, mitochondrion, nucleus, plastid	11.02	8.81
CDY10103	Canola	extracellular	6.69	6.32

Protein Annotations

EnsemblPlants:CDX87279	EnsemblPlantsGene:GSBRNA2T00146236001	Gene3D:3.40.525.10	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom_sf
InterPro:IPR001251	InterPro:IPR036865	PANTHER:PTHR10174	PANTHER:PTHR10174:SF197	PFAM:PF00650	PFscan:PS50191
ProteinID:CDX87279	ProteinID:CDX87279.1	SEG:seg	SMART:SM00516	SUPFAM:SSF46938	SUPFAM:SSF52087
UniParc:UPI0004EE713A	MapMan:35.2	:	:	:	:

Description

BnaC09g05940D

Coordinates

chrLK031849:-:1706701..1708644

Molecular Weight (calculated)

29157.1 Da

IEP (calculated)

8.901

GRAVY (calculated)

-0.117

Length

254 amino acids

Sequence
(BLAST)

001: MSIRLSSTLF AASISFKNSK SFYSDRSRSC RFSVRSCVSD SLNANKLVLE VKERLAKDCT SLPIGKNGRD DEEMILWFLK DRRFSVDEAI GKLTKAIKWR
101: HEFKVNELSE DSVKAAAETG KAYVHGFLDV KGRPVVILLD PIEDEKLCVF LLEKALSKLP AGQHKILGIF DLRGFGSQNA DLKFLTFLFD VFYYYYPSRL
201: DEVLFVDAPF IFQPIWQFTK PLVKSYASLV KFCSVETVRK EYFTEETIPS NFRS

Best Arabidopsis Sequence Match ( AT5G63060.1 )
(BLAST)

001: MSIRFSSTIV AASVNFKSSK NLNINRSRNC RFSVRSCVSE SQHAHKLVLE VKERLAKDCT SLPLGKYGRD DEDMILWFLK DRRFSVDEAI GKLTKAIKWR
101: HEFKVDELSE DSIKAATDTG KAYVHGFLDV KGRPVVIVAP AKHIPGLLDP IEDEKLCVFL LEKALSKLPA GQHKILGIFD LRGFGSQNAD LKFLTFLFDV
201: FYYYYPSRLD EVLFVDAPFI FQPIWQFTKP LVKQYASLVK FCSAETVRKE YFTEETLPSN FRS

Arabidopsis Description

Sec14p-like phosphatidylinositol transfer family protein [Source:UniProtKB/TrEMBL;Acc:F4K975]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.