CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017768.1-P	Field mustard	cytosol	97.92	97.92
CDX72592	Canola	cytosol	97.58	97.58
CDY65854	Canola	nucleus	83.74	83.74
CDY24776	Canola	cytosol	84.43	83.28
CDY35466	Canola	cytosol	83.05	81.91
CDX75583	Canola	cytosol	39.79	73.25
Solyc02g085300.2.1	Tomato	cytosol	51.56	68.98
VIT_04s0023g01720.t01	Wine grape	cytosol, mitochondrion	67.82	67.59
PGSC0003DMT400038571	Potato	cytosol	61.94	66.79
KRH08288	Soybean	cytosol	67.47	65.88
KRH69927	Soybean	cytosol	67.13	65.54
GSMUA_AchrUn_...	Banana	cytosol	58.13	58.95
CDX73146	Canola	cytosol	58.13	58.13
GSMUA_Achr4P03190_001	Banana	cytosol	53.29	55.0
GSMUA_Achr8P26360_001	Banana	cytosol	55.71	54.21
CDY38239	Canola	cytosol	11.76	53.97
EER93541	Sorghum	cytosol	51.9	50.51
Zm00001d033836_P001	Maize	nucleus	50.87	49.83
KXG37682	Sorghum	cytosol	50.52	49.83
HORVU4Hr1G009210.2	Barley	cytosol	49.13	48.63
TraesCS4D01G055200.1	Wheat	cytosol	49.13	48.63
TraesCS4A01G259700.1	Wheat	cytosol	49.13	48.63
KXG37681	Sorghum	cytosol	51.9	48.54
Os03t0724100-01	Rice	cytosol	50.17	48.49
TraesCS4D01G055100.1	Wheat	cytosol	34.95	48.33
TraesCS4B01G055000.1	Wheat	cytosol	48.44	47.95
TraesCS4A01G259600.1	Wheat	cytosol	47.4	46.92
TraesCS4D01G055300.1	Wheat	cytosol	47.06	46.58
TraesCS4D01G055400.1	Wheat	cytosol	47.06	46.58
TraesCS4A01G259500.1	Wheat	cytosol	47.06	46.58
TraesCS4B01G055200.1	Wheat	cytosol	46.71	46.23
TraesCS4B01G055100.1	Wheat	cytosol	44.98	45.94
HORVU4Hr1G074380.1	Barley	cytosol	21.8	45.32
HORVU4Hr1G009310.1	Barley	cytosol	45.67	45.21
HORVU4Hr1G009190.1	Barley	cytosol	45.33	44.86
HORVU4Hr1G005090.2	Barley	cytosol	20.07	44.62
CDY45413	Canola	cytosol	58.48	43.9
TraesCS7B01G089700.1	Wheat	cytosol	42.91	43.82
HORVU6Hr1G021650.1	Barley	cytosol, mitochondrion, nucleus	20.76	43.17
HORVU5Hr1G114590.3	Barley	mitochondrion	17.65	41.8
CDY00428	Canola	cytosol	43.25	40.98
CDY56380	Canola	cytosol	43.25	40.98
Zm00001d033837_P001	Maize	plastid	41.87	40.6
HORVU3Hr1G080050.1	Barley	cytosol, mitochondrion, plastid	21.45	39.74
CDX90694	Canola	cytosol	41.87	39.16
HORVU5Hr1G020290.3	Barley	plastid	20.42	38.56
CDY05023	Canola	cytosol	41.52	38.22
CDY21345	Canola	cytosol	42.56	38.2
CDY12289	Canola	cytosol	24.91	34.12
CDY38240	Canola	peroxisome	16.61	33.1
CDY33738	Canola	cytosol	20.76	24.59
CDX81674	Canola	cytosol	20.07	23.77
CDX90047	Canola	cytosol	20.76	23.53
CDY15164	Canola	cytosol	20.07	22.75
CDY38020	Canola	cytosol	20.42	22.52
CDY45292	Canola	cytosol	18.69	22.04
CDY16746	Canola	plastid	19.03	21.65
CDX87279	Canola	plastid	19.03	21.65
CDY51766	Canola	cytosol	18.34	21.63
CDY33739	Canola	cytosol	17.99	20.55
CDX81673	Canola	endoplasmic reticulum, golgi	18.69	17.76
CDY10026	Canola	cytosol	20.42	14.18
CDY59787	Canola	cytosol	20.07	13.94
CDX81672	Canola	cytosol	18.34	13.8
CDY10638	Canola	nucleus	15.92	12.23
CDY64658	Canola	cytosol	14.19	12.02
CDY38325	Canola	cytosol	14.53	11.32
CDY71148	Canola	cytosol, mitochondrion, nucleus, plastid	10.73	9.75
CDY10103	Canola	extracellular	7.96	8.55

Protein Annotations

EnsemblPlants:CDY42697	EnsemblPlantsGene:GSBRNA2T00075223001	Gene3D:3.40.525.10	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom
InterPro:CRAL/TRIO_N_dom_sf	InterPro:IPR001251	InterPro:IPR036865	PANTHER:PTHR10174	PANTHER:PTHR10174:SF206	PFAM:PF00650
PFscan:PS50191	ProteinID:CDY42697	ProteinID:CDY42697.1	SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938
SUPFAM:SSF52087	UniParc:UPI0004EE593C	UniProt:A0A078HXU7	MapMan:35.2	:	:

Description

BnaA03g53500DBnaA03g53500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HXU7]

Coordinates

chrLK032532:-:42804..44633

Molecular Weight (calculated)

33200.2 Da

IEP (calculated)

6.592

GRAVY (calculated)

-0.649

Length

289 amino acids

Sequence
(BLAST)

001: MSAHQLEDNS QQDNKVSKLK SALGPLSGHS LVFCSDASLR RYLDARSWNV ENAKQMIEET LKWRSTYKPH EIPWHEVAHE GETGKVSRAS FHDRHGRTVL
101: IMRPGLQNTT SAEGNIRHLV YLLENAIINL PKGQEQMSWL IDFTGWSMAN NAPMKTTRDI IYILQNHYPE RLGMSFLYNP PRLFQAGYKA VKYFLDPRTA
201: QKVNFVYPND KASDELMRSH FDMENLPKEF GGEATLEYDH EEFSRQMFED DLKTAKFWGL EEKQYLKPNG FSPADVVPEP ATSLASVAN

Best Arabidopsis Sequence Match ( AT4G36640.3 )
(BLAST)

001: MFRRRNAHQL DNDDSQQDNK VRELKSAIGP LSGHSLVFCS DASLRRFLDA RNWDVEKAKK MIQETLKWRS TYKPQEIRWN QVAHEGETGK ASRASFHDRQ
101: GRVVLIMRPA MQNSTSQEGN IRHLVYLLEN AIINLPKGQK QMSWLIDFTG WSMAVNPPMK TTREIIHILQ NYYPERLGIA FLYNPPRLFQ AVYRAAKYFL
201: DPRTAEKVKF VYPKDKASDE LMTTHFDVEN LPKEFGGEAT LEYDHEDFSR QMYEDDLKTA KYWGLEGKHY PKTNGFSPSD VVPEPAIEIA SAAS

Arabidopsis Description

At4g36640 [Source:UniProtKB/TrEMBL;Acc:O23217]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.