Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75583 | Canola | cytosol | 47.62 | 19.11 |
| Bra031370.1-P | Field mustard | cytosol | 88.89 | 17.39 |
| CDY21345 | Canola | cytosol | 88.89 | 17.39 |
| CDY00428 | Canola | cytosol | 82.54 | 17.05 |
| AT1G22180.4 | Thale cress | cytosol | 84.13 | 16.88 |
| CDY56380 | Canola | cytosol | 80.95 | 16.72 |
| CDX90694 | Canola | cytosol | 71.43 | 14.56 |
| CDY05023 | Canola | cytosol | 71.43 | 14.33 |
| KRH62380 | Soybean | cytosol | 58.73 | 13.5 |
| VIT_18s0001g05080.t01 | Wine grape | nucleus | 76.19 | 13.3 |
| KRH16691 | Soybean | cytosol | 69.84 | 13.25 |
| KRH18888 | Soybean | cytosol | 69.84 | 13.21 |
| Solyc04g072810.2.1 | Tomato | cytosol | 68.25 | 13.19 |
| KRH53100 | Soybean | cytosol | 57.14 | 13.14 |
| PGSC0003DMT400024527 | Potato | cytosol | 68.25 | 13.03 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 65.08 | 13.02 |
| CDY35466 | Canola | cytosol | 57.14 | 12.29 |
| CDY24776 | Canola | cytosol | 57.14 | 12.29 |
| CDY42697 | Canola | cytosol | 53.97 | 11.76 |
| CDX72592 | Canola | cytosol | 53.97 | 11.76 |
| CDY65854 | Canola | nucleus | 53.97 | 11.76 |
| GSMUA_Achr3P04420_001 | Banana | cytosol | 61.9 | 11.68 |
| CDX73146 | Canola | cytosol | 52.38 | 11.42 |
| EES05517 | Sorghum | cytosol | 61.9 | 11.14 |
| Zm00001d052231_P003 | Maize | cytosol | 61.9 | 11.14 |
| KRH62383 | Soybean | cytosol | 58.73 | 10.79 |
| Os02t0752000-01 | Rice | cytosol | 60.32 | 10.05 |
| TraesCS6D01G281700.1 | Wheat | nucleus | 61.9 | 9.92 |
| TraesCS6A01G302200.1 | Wheat | nucleus | 61.9 | 9.68 |
| HORVU6Hr1G075070.1 | Barley | nucleus | 61.9 | 9.68 |
| TraesCS6B01G331400.1 | Wheat | nucleus | 61.9 | 9.68 |
| CDY45413 | Canola | cytosol | 52.38 | 8.57 |
| CDY33738 | Canola | cytosol | 31.75 | 8.2 |
| CDY45292 | Canola | cytosol | 31.75 | 8.16 |
| CDY51766 | Canola | cytosol | 31.75 | 8.16 |
| CDY16746 | Canola | plastid | 31.75 | 7.87 |
| CDX87279 | Canola | plastid | 31.75 | 7.87 |
| CDX81674 | Canola | cytosol | 30.16 | 7.79 |
| CDY33739 | Canola | cytosol | 25.4 | 6.32 |
| CDY38020 | Canola | cytosol | 25.4 | 6.11 |
| CDY15164 | Canola | cytosol | 23.81 | 5.88 |
| CDX90047 | Canola | cytosol | 23.81 | 5.88 |
| CDX81673 | Canola | endoplasmic reticulum, golgi | 25.4 | 5.26 |
| CDY59787 | Canola | cytosol | 33.33 | 5.05 |
| CDY10026 | Canola | cytosol | 33.33 | 5.05 |
| CDY64658 | Canola | cytosol | 26.98 | 4.99 |
| CDY38325 | Canola | cytosol | 28.57 | 4.85 |
| CDY10638 | Canola | nucleus | 28.57 | 4.79 |
| CDX81672 | Canola | cytosol | 28.57 | 4.69 |
| CDY12289 | Canola | cytosol | 11.11 | 3.32 |
| CDY38240 | Canola | peroxisome | 4.76 | 2.07 |
| CDY10103 | Canola | extracellular | 6.35 | 1.49 |
| CDY71148 | Canola | cytosol, mitochondrion, nucleus, plastid | 6.35 | 1.26 |
Protein Annotations
| EnsemblPlants:CDY38239 | EnsemblPlantsGene:GSBRNA2T00065583001 | Gene3D:3.40.525.10 | InterPro:CRAL-TRIO_dom_sf | InterPro:IPR036865 | PANTHER:PTHR10174 |
| PANTHER:PTHR10174:SF202 | ProteinID:CDY38239 | ProteinID:CDY38239.1 | SUPFAM:SSF52087 | UniParc:UPI0004EECB8B | UniProt:A0A078HLL1 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC05g17560DBnaC05g17560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HLL1]
Coordinates
chrLK032419:+:230917..234507
Molecular Weight (calculated)
7580.2 Da
IEP (calculated)
9.291
GRAVY (calculated)
-0.657
Length
63 amino acids
Sequence
(BLAST)
(BLAST)
1: MLKETLKWRT QYKPEEIRWE DISREAETGK IYRANCTDKY GRPVLVMRPS CQVWCLKFLI PSS
001: MLKETLKWRA QYKPEEIRWE EIAREAETGK IYRANCTDKY GRTVLVMRPS CQNTKSYKGQ IRILVYCMEN AILNLPDNQE QMVWLIDFHG FNMSHISLKV
101: SRETAHVLQE HYPERLGLAI VYNPPKIFES FYKMVKPFLE PKTSNKVKFV YSDDNLSNKL LEDLFDMEQL EVAFGGKNSD AGFNFEKYAE RMREDDLKFY
201: GNTTVSSTSA HLTNSDSEVS DSEMKYLEDK EDETIENGTL QSPLDTTKT
101: SRETAHVLQE HYPERLGLAI VYNPPKIFES FYKMVKPFLE PKTSNKVKFV YSDDNLSNKL LEDLFDMEQL EVAFGGKNSD AGFNFEKYAE RMREDDLKFY
201: GNTTVSSTSA HLTNSDSEVS DSEMKYLEDK EDETIENGTL QSPLDTTKT
Arabidopsis Description
F16L1.9 protein [Source:UniProtKB/TrEMBL;Acc:Q9LM14]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.