Factsheet for Solyc04g005840.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007387	Potato	plasma membrane	97.39	96.81
VIT_01s0026g01210.t01	Wine grape	plasma membrane	84.57	83.9
KRG90133	Soybean	plasma membrane	84.97	82.81
KRH33389	Soybean	plasma membrane	83.77	82.12
Solyc02g087500.1.1	Tomato	plasma membrane	78.76	77.36
TraesCS4D01G065400.1	Wheat	plasma membrane, plastid	75.55	73.78
EER90914	Sorghum	plasma membrane	74.55	73.66
TraesCS4A01G248400.1	Wheat	plasma membrane	75.35	73.44
Zm00001d033915_P001	Maize	plasma membrane	74.35	72.6
Os03t0735900-00	Rice	golgi, peroxisome, plasma membrane	74.15	69.68
TraesCS4B01G066500.1	Wheat	plasma membrane	75.15	68.81
Solyc10g084900.1.1	Tomato	plasma membrane	66.53	68.31
TraesCS2B01G319100.1	Wheat	cytosol, peroxisome, plasma membrane	53.51	66.58
HORVU7Hr1G007570.1	Barley	peroxisome, plasma membrane	67.94	66.34
EER91628	Sorghum	cytosol	67.33	64.86
TraesCS1A01G139200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	66.13	64.58
Zm00001d032973_P001	Maize	cytosol, peroxisome, plasma membrane	66.93	64.11
TraesCS1B01G149600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	65.53	63.99
TraesCS1D01G132800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	65.53	63.99
TraesCS4D01G280800.1	Wheat	peroxisome	62.12	62.0
TraesCS4B01G282100.1	Wheat	peroxisome	61.92	61.8
TraesCS4A01G021500.1	Wheat	peroxisome	61.92	61.8
HORVU4Hr1G011110.4	Barley	plastid	75.55	60.42
HORVU1Hr1G032150.4	Barley	peroxisome	64.73	59.81
HORVU4Hr1G074470.4	Barley	plastid	62.53	59.54
Zm00001d027810_P001	Maize	cytosol, peroxisome, plasma membrane	60.12	59.29
KXG40111	Sorghum	cytosol, peroxisome, plasma membrane	61.52	58.59
TraesCS2A01G015700.1	Wheat	mitochondrion	67.33	57.83
Solyc09g014350.2.1	Tomato	cytosol	57.11	56.55
Solyc01g094700.2.1	Tomato	plasma membrane	54.71	54.49
Os10t0413400-00	Rice	plastid	67.13	54.3
Solyc04g011600.2.1	Tomato	plasma membrane	52.91	53.77
Os03t0166600-00	Rice	cytosol	26.85	53.39
Solyc05g053030.1.1	Tomato	plasma membrane	48.9	48.61
Solyc07g056320.2.1	Tomato	plasma membrane	50.3	45.97
GSMUA_Achr5P14930_001	Banana	plasma membrane	62.73	42.76

Protein Annotations

Gene3D:1.20.1440.100	MapMan:26.9.3.2	Gene3D:3.40.50.1000	MapMan:5.2.1.2.2	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0010143
GO:GO:0016020	GO:GO:0016021	GO:GO:0016311	GO:GO:0016740	GO:GO:0016746	GO:GO:0016787
GO:GO:0016791	GO:GO:0090447	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023214	UniProt:K4BNJ0
PFAM:PF01553	PFAM:PF12710	PANTHER:PTHR15486	PANTHER:PTHR15486:SF7	InterPro:Plipid/glycerol_acylTrfase	SMART:SM00563
SUPFAM:SSF56784	SUPFAM:SSF69593	EnsemblPlantsGene:Solyc04g005840.1	EnsemblPlants:Solyc04g005840.1.1	TMHMM:TMhelix	UniParc:UPI00027665E5
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:538803..541051

Molecular Weight (calculated)

55063.1 Da

IEP (calculated)

9.531

GRAVY (calculated)

0.220

Length

499 amino acids

Sequence
(BLAST)

001: MAFPSVDKCP SIGREKDTVI ADMDGTLLRG RSSFPYFALV AFEVGGVLRL LILLLSSPLA GLLYYFVSES AGIQLLIFVT FAGMKVSDVE SVARAVLPKF
101: YSEDIHPESW KVFSSCGKRC VLTANPRVMV EPFLKDFLGT DLVLGTEIES YKGRATGFVK KPGVLVGKNK ADIVIKAFGE SKPEIGLGDR HTDFPFLALC
201: KEGYIVPPKP EVKAVTTNKL PKPIIFHDGR LVQKPTPLMS LIILLWIPIG FILACLRIAA GSLLPMPIVY YAFWALGVRV IIKGNPPPPV NKSNNKSGVL
301: FICSHRTLLD PIFLSTALGR PIPAVTYSVS RLSEIISPIK TVRLNRDRVL DATMIKKLLQ EGDLAICPEG TTCREPFLLR FSALFAELTD ELVPVAMVNK
401: MSMFHGTTAR GWKGMDPFYF FMNPSPAYEV TFLNKLPYEL TCNAGKSSHE VANYIQRVIA STLSYECTSF TRKDKYRALA GNDGIVVEKP KIKKSIMGC

Best Arabidopsis Sequence Match ( AT2G38110.1 )
(BLAST)

001: MGAQEKRRRF EQISKCDVKD RSNHTVAADL DGTLLISRSA FPYYFLVALE AGSLLRALIL LVSVPFVYLT YLTISETLAI NVFVFITFAG LKIRDVELVV
101: RSVLPRFYAE DVRPDTWRIF NTFGKRYIIT ASPRIMVEPF VKTFLGVDKV LGTELEVSKS GRATGFTRKP GILVGQYKRD VVLREFGGLA SDLPDLGLGD
201: SKTDHDFMSI CKEGYMVPRT KCEPLPRNKL LSPIIFHEGR LVQRPTPLVA LLTFLWLPVG FVLSIIRVYT NIPLPERIAR YNYKLTGIKL VVNGHPPPPP
301: KPGQPGHLLV CNHRTVLDPV VTAVALGRKI SCVTYSISKF SELISPIKAV ALTRQREKDA ANIKRLLEEG DLVICPEGTT CREPFLLRFS ALFAELTDRI
401: VPVAINTKQS MFNGTTTRGY KLLDPYFAFM NPRPTYEITF LKQIPAELTC KGGKSPIEVA NYIQRVLGGT LGFECTNFTR KDKYAMLAGT DGRVPVKKEK
501: T

Arabidopsis Description

GPAT6Glycerol-3-phosphate 2-O-acyltransferase 6 [Source:UniProtKB/Swiss-Prot;Acc:O80437]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.