Factsheet for VIT_00s0768g00040.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g04420.t01
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01
VIT_17s0000g06020.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10520.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT5G10520.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592
AT5G10520.1	VIT_06s0009g01910.t01	AT2G41100.1	17360592
AT5G10520.1	VIT_08s0040g00470.t01	AT2G41100.1	17360592
AT5G10520.1	VIT_17s0000g06020.t01	AT3G47620.1	21798944
AT5G10520.1	VIT_05s0020g04420.t01	AT4G14640.1	17360592
AT5G10520.1	VIT_06s0009g01910.t01	AT5G21274.1	17360592
AT5G10520.1	VIT_08s0040g00470.t01	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0929g00020.t01	Wine grape	cytosol	97.97	49.59
CDY71497	Canola	cytosol	47.56	36.22
Bra028581.1-P	Field mustard	cytosol	44.31	27.46
KRH45545	Soybean	cytosol	49.59	25.58
Solyc11g010730.1.1	Tomato	cytosol	52.03	25.4
KRH39471	Soybean	cytosol	46.75	25.39
PGSC0003DMT400041603	Potato	cytosol	51.63	25.3
Bra031854.1-P	Field mustard	cytosol	47.56	25.05
KRG99478	Soybean	cytosol	48.78	24.79
PGSC0003DMT400060605	Potato	cytosol	47.56	24.68
AT5G65530.1	Thale cress	cytosol	45.53	24.56
CDY37833	Canola	cytosol	46.34	24.41
AT5G10520.1	Thale cress	cytosol	46.34	24.41
CDY14578	Canola	cytosol	44.31	24.22
GSMUA_Achr2P02460_001	Banana	cytosol	51.22	24.05
Bra024395.1-P	Field mustard	cytosol	43.9	23.95
CDY08783	Canola	cytosol	44.31	23.9
CDY33949	Canola	cytosol	47.97	23.74
Bra009025.1-P	Field mustard	cytosol	45.94	23.59
CDX69825	Canola	cytosol	45.94	23.59
CDX97023	Canola	cytosol	46.34	23.22
CDY40103	Canola	cytosol	44.31	22.76
CDX85756	Canola	cytosol	44.72	22.73
TraesCS7D01G471700.1	Wheat	cytosol	47.15	21.52
TraesCS7A01G484300.1	Wheat	cytosol	46.75	21.38
Os06t0663900-03	Rice	cytosol	47.15	20.9
VIT_07s0104g00850.t01	Wine grape	cytosol, nucleus, plastid	36.59	20.74
VIT_00s1291g00030.t01	Wine grape	cytosol	23.58	20.42
TraesCS7B01G388000.3	Wheat	mitochondrion	47.97	20.34
VIT_14s0030g00390.t01	Wine grape	cytosol	34.55	20.09
HORVU7Hr1G109290.2	Barley	cytosol	46.75	20.03
KXG20550	Sorghum	cytosol	45.12	19.34
Zm00001d046941_P001	Maize	cytosol	44.72	19.3
KRH74475	Soybean	cytosol	24.39	19.29
Solyc04g014410.2.1	Tomato	cytosol, mitochondrion	23.98	18.5
VIT_05s0020g02230.t01	Wine grape	cytosol	36.59	18.48
VIT_11s0052g00800.t01	Wine grape	mitochondrion	24.8	15.8
VIT_11s0052g01810.t01	Wine grape	nucleus	28.46	11.63
VIT_14s0006g01420.t01	Wine grape	cytosol	18.29	8.67
VIT_03s0038g02400.t01	Wine grape	cytosol	23.17	8.37
VIT_18s0001g01680.t01	Wine grape	cytosol	25.61	8.3
VIT_18s0001g14690.t01	Wine grape	cytosol	23.58	7.62
VIT_03s0038g03600.t01	Wine grape	mitochondrion	17.48	7.6
VIT_04s0044g01560.t01	Wine grape	cytosol	22.76	7.36
Zm00001d040679_P001	Maize	plastid	8.54	5.88
Zm00001d018955_P001	Maize	cytosol	3.25	4.97
Zm00001d047798_P001	Maize	cytosol	2.44	4.26

Protein Annotations

Gene3D:3.30.200.20	MapMan:50.2.7	ProteinID:CCB59169	ProteinID:CCB59169.1	UniProt:F6HWV5	EMBL:FN596312
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004675	GO:GO:0004871
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464
GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0007166	GO:GO:0007178	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
GO:GO:0038023	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00107	PFscan:PS50011
PANTHER:PTHR27001	PANTHER:PTHR27001:SF105	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SUPFAM:SSF56112	UniParc:UPI000210A1FA
ArrayExpress:VIT_00s0768g00040	EnsemblPlantsGene:VIT_00s0768g00040	EnsemblPlants:VIT_00s0768g00040.t01	RefSeq:XP_002274429	RefSeq:XP_002274429.2	SEG:seg

Description

No Description!

Coordinates

chrUn:+:35193400..35196002

Molecular Weight (calculated)

26885.7 Da

IEP (calculated)

6.741

GRAVY (calculated)

-0.545

Length

246 amino acids

Sequence
(BLAST)

001: MGDSEEAQLI PVEEIGETKE KPELRPQDGS KKPDSSDDQN SPRGVLEIPV LGGDSDHSTC SSCCSSSNDK STVHQELVRE THRSHWKSLF GALKKKSVRR
101: FSTIPSLAGH ELSRISLRRK LARIRSAEDP ISVEGMPVPK PSWRSFDYAE LAAATDNFSS ENLIGKGGHA EVYRGCLSDG QLVAVKKLMK KEKEHEERTG
201: DFLSELGIIA HIDHPNAARL IGFGVDGGLH LVLQFSPQGS LASVLH

Best Arabidopsis Sequence Match ( AT5G10520.1 )
(BLAST)

001: MAVEDNKNSE SKNHQEVELH RNDLGLEDSS SPRGVLGMVS DSDNSSSSCS SCSSDDKSSS TSSPFSNTTK TVSSSHHGLQ WNKMIESIKK KSMRRFSVIP
101: LLASYELTRK NLRRKQPKLT PSESAFTCEA FFMAKPSWRN FTYEELAVAT DYFNPENMIG KGGHAEVYKG VLINGETVAI KKLMSHAKEE EERVSDFLSE
201: LGIIAHVNHP NAARLRGFSS DRGLHFVLEY APYGSLASML FGSEECLEWK IRYKVALGIA DGLSYLHNAC PRRIIHRDIK ASNILLNHDY EAQISDFGLA
301: KWLPENWPHH VVFPIEGTFG YLAPEYFMHG IVDEKIDVFA FGVLLLEIIT SRRAVDTASR QSIVAWAKPF LEKNSMEDIV DPRLGNMFNP TEMQRVMLTA
401: SMCVHHIAAM RPDMTRLVQL LRGEDGPAEL QQKAGERTMS VNACDLQDHT SSSYLNELRR HRQLLME

Arabidopsis Description

RBK1RBK1 [Source:UniProtKB/TrEMBL;Acc:A0A178UTT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.