Factsheet for VIT_00s0929g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g04420.t01
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01
VIT_17s0000g06020.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10520.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT5G10520.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592
AT5G10520.1	VIT_06s0009g01910.t01	AT2G41100.1	17360592
AT5G10520.1	VIT_08s0040g00470.t01	AT2G41100.1	17360592
AT5G10520.1	VIT_17s0000g06020.t01	AT3G47620.1	21798944
AT5G10520.1	VIT_05s0020g04420.t01	AT4G14640.1	17360592
AT5G10520.1	VIT_06s0009g01910.t01	AT5G21274.1	17360592
AT5G10520.1	VIT_08s0040g00470.t01	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1291g00030.t01	Wine grape	cytosol	58.23	99.65
VIT_00s0768g00040.t01	Wine grape	cytosol	49.59	97.97
KRH74475	Soybean	cytosol	46.09	72.03
Solyc04g014410.2.1	Tomato	cytosol, mitochondrion	45.06	68.65
KRH39471	Soybean	cytosol	57.41	61.59
KRH45545	Soybean	cytosol	59.26	60.38
Solyc11g010730.1.1	Tomato	cytosol	62.14	59.92
PGSC0003DMT400041603	Potato	cytosol	61.73	59.76
PGSC0003DMT400060605	Potato	cytosol	57.61	59.07
AT5G65530.1	Thale cress	cytosol	55.35	58.99
KRG99478	Soybean	cytosol	58.23	58.47
Bra024395.1-P	Field mustard	cytosol	53.29	57.43
CDY08783	Canola	cytosol	53.7	57.24
CDY14578	Canola	cytosol	52.88	57.11
Zm00001d047798_P001	Maize	cytosol	16.46	56.74
AT5G10520.1	Thale cress	cytosol	54.12	56.32
Bra031854.1-P	Field mustard	cytosol	54.12	56.32
CDY37833	Canola	cytosol	53.7	55.89
Bra009025.1-P	Field mustard	cytosol	54.73	55.53
CDX69825	Canola	cytosol	54.73	55.53
CDY71497	Canola	cytosol	36.63	55.11
CDX97023	Canola	cytosol	55.14	54.58
GSMUA_Achr2P02460_001	Banana	cytosol	58.64	54.39
CDY33949	Canola	cytosol	54.53	53.32
CDY40103	Canola	cytosol	52.47	53.24
CDX85756	Canola	cytosol	52.88	53.1
Bra028581.1-P	Field mustard	cytosol	43.0	52.64
Zm00001d018955_P001	Maize	cytosol	16.87	50.93
VIT_14s0030g00390.t01	Wine grape	cytosol	43.83	50.35
Os06t0663900-03	Rice	cytosol	55.97	49.01
TraesCS7D01G471700.1	Wheat	cytosol	54.32	48.98
TraesCS7A01G484300.1	Wheat	cytosol	53.7	48.51
VIT_07s0104g00850.t01	Wine grape	cytosol, nucleus, plastid	43.21	48.39
Zm00001d046941_P001	Maize	cytosol	54.73	46.67
VIT_11s0052g00800.t01	Wine grape	mitochondrion	37.04	46.63
KXG20550	Sorghum	cytosol	54.94	46.52
HORVU7Hr1G109290.2	Barley	cytosol	54.73	46.34
TraesCS7B01G388000.3	Wheat	mitochondrion	54.73	45.86
VIT_05s0020g02230.t01	Wine grape	cytosol	45.88	45.79
VIT_11s0052g01810.t01	Wine grape	nucleus	40.53	32.72
Zm00001d040679_P001	Maize	plastid	21.81	29.69
VIT_14s0006g01420.t01	Wine grape	cytosol	28.6	26.78
VIT_03s0038g03600.t01	Wine grape	mitochondrion	27.37	23.5
VIT_03s0038g02400.t01	Wine grape	cytosol	32.1	22.91
VIT_18s0001g01680.t01	Wine grape	cytosol	34.57	22.13
VIT_04s0044g01560.t01	Wine grape	cytosol	31.69	20.24
VIT_18s0001g14690.t01	Wine grape	cytosol	31.28	19.97

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100263541	wikigene:100263541	EntrezGene:100854520	wikigene:100854520	EntrezGene:100855257
wikigene:100855257	MapMan:18.4.1.36	MapMan:27.4.7	Gene3D:3.30.200.20	ProteinID:CCB54425	ProteinID:CCB54425.1
UniProt:F6HJV6	EMBL:FN595862	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0004674	GO:GO:0004675	GO:GO:0004871	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165
GO:GO:0007166	GO:GO:0007178	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0038023	InterPro:IPR000719	InterPro:Kinase-like_dom_sf
EntrezGene:LOC100263541	wikigene:LOC100263541	EntrezGene:LOC100854520	wikigene:LOC100854520	EntrezGene:LOC100855257	wikigene:LOC100855257
PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF105
InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI00021098E8
ArrayExpress:VIT_00s0929g00020	EnsemblPlantsGene:VIT_00s0929g00020	EnsemblPlants:VIT_00s0929g00020.t01	unigene:Vvi.3438	RefSeq:XP_003635501	RefSeq:XP_003635501.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:36929315..36933459

Molecular Weight (calculated)

54264.5 Da

IEP (calculated)

6.513

GRAVY (calculated)

-0.403

Length

486 amino acids

Sequence
(BLAST)

001: FYSLIWEFNL KTSQMGDSEE AQIIPVEEIG ETKEKPEIRP QDGSKKQDSS DDQNSPRGVL EIPVLGGDSD HSTCSSCSSS SNDKSTVHQE LVRETHRSHW
101: KSLFGALKKK SVRRFSTIPS LAGHELSRIS LRRKLARIRS AEDPISVEGM PVPKPSWRSF DYAELAAATD NFSSENLIGK GGHAEVYRGC LSDGQLVAVK
201: KLMKKEKEDE ERTGDFLSEL GIIAHIDHPN AARLIGFGVD GGLHLVLQFS PQGSLASVLH GTTESLEWKI RFKVAVGVAE GLQYLHQGCH RRIIHRDIKA
301: SNILLTQDYQ PQISDFGLAK WLPDKWAHHV VFPIEGTFGY LAPEYFMHGI VDEKTDVFAF GVLLLELITG RHAVDSSRQS LVIWAKPLLD ANDVKELADS
401: RLGDCYDLGE MKRAMLTASM CIHHSSSMRP EMNRVVQLLR GEGKSPEPKQ KSNVGRALIL DDSDLADYTP TSYLRDLNRH MELVLE

Best Arabidopsis Sequence Match ( AT5G65530.1 )
(BLAST)

001: MAVEEMEKKI KGSQETELHK NDLSIEDPSP RCVLEIPVMS SDSDNSSSCS SCSPDKSSSP LSTTPPNVSS FHQWNKMIES IKKKSIRRFS VIPLLASYEL
101: TRKKKQPKLS PCSENDFDCD QILVAKPSWR NFTFDELVAA TDNFNPENMI GKGGHAEVYK GVLPDGETVA IKKLTRHAKE VEERVSDFLS ELGIIAHVNH
201: PNAARLRGFS CDRGLHFVLE YSSHGSLASL LFGSEECLDW KKRYKVAMGI ADGLSYLHND CPRRIIHRDI KASNILLSQD YEAQISDFGL AKWLPEHWPH
301: HIVFPIEGTF GYLAPEYFMH GIVDEKTDVF AFGVLLLEII TGRRAVDTDS RQSIVMWAKP LLEKNNMEEI VDPQLGNDFD ETEMKRVMQT ASMCIHHVST
401: MRPDMNRLVQ LLRGDDQLAE QKPGGARTVS LDDCDLDHTS SSYLNDLTRH RQLLME

Arabidopsis Description

Protein kinase superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KI00]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.