Factsheet for VIT_07s0005g02060.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
golgi 1
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013372	Potato	plasma membrane	86.47	86.11
Solyc01g079150.2.1	Tomato	plasma membrane	86.05	85.69
KRG96573	Soybean	plasma membrane	84.8	84.09
GSMUA_Achr3P12750_001	Banana	plasma membrane	83.96	83.73
KXG23716	Sorghum	plasma membrane	82.43	83.36
GSMUA_Achr3P24480_001	Banana	golgi, peroxisome, plasma membrane	83.54	83.31
VIT_05s0020g00440.t01	Wine grape	plasma membrane	83.12	83.12
KRH68309	Soybean	plasma membrane	83.4	82.71
Os12t0566000-02	Rice	plasma membrane	82.01	82.7
CDX93980	Canola	plasma membrane	81.03	82.29
CDX80082	Canola	plasma membrane	80.75	82.24
CDY37790	Canola	plasma membrane	80.75	82.24
Bra014404.1-P	Field mustard	plasma membrane	81.03	82.18
CDY50920	Canola	plasma membrane	80.47	81.96
CDX83341	Canola	plasma membrane	80.33	81.82
AT3G62270.1	Thale cress	plasma membrane	80.2	81.79
CDY51414	Canola	plasma membrane	80.06	81.77
Bra000442.1-P	Field mustard	plasma membrane	80.06	81.65
Bra021386.1-P	Field mustard	plasma membrane	79.78	81.6
CDY27507	Canola	plasma membrane	79.78	81.48
Bra004476.1-P	Field mustard	plasma membrane	79.78	81.25
TraesCS5B01G091200.1	Wheat	plasma membrane	80.61	81.18
TraesCS5D01G097600.1	Wheat	plasma membrane	80.61	81.18
TraesCS5A01G085200.1	Wheat	plasma membrane	80.61	81.18
HORVU5Hr1G022140.1	Barley	cytosol, golgi, plasma membrane	79.92	80.48
VIT_17s0000g08530.t01	Wine grape	plasma membrane	80.61	80.28
AT2G47160.2	Thale cress	plasma membrane	80.47	79.15
CDY69873	Canola	golgi, plasma membrane	53.28	77.96
VIT_04s0008g04980.t01	Wine grape	plasma membrane	55.09	59.04
CDY37788	Canola	cytosol	10.04	59.02
CDY37789	Canola	endoplasmic reticulum, golgi	17.85	57.4
VIT_11s0016g04740.t01	Wine grape	plasma membrane	53.97	57.33
VIT_09s0002g05810.t01	Wine grape	plasma membrane	54.81	57.21
Zm00001d010317_P001	Maize	cytosol, golgi, plastid	11.16	45.2
KRH74995	Soybean	extracellular	4.04	34.94
Zm00001d050809_P001	Maize	cytosol	5.58	28.99
Zm00001d000089_P001	Maize	cytosol	8.93	27.47
Zm00001d030297_P001	Maize	plastid	17.02	23.78

Protein Annotations

EntrezGene:100247044	wikigene:100247044	MapMan:24.2.3.6	EMBL:AM423505	ProteinID:CAN71135	ProteinID:CAN71135.1
ProteinID:CBI37003	ProteinID:CBI37003.3	UniProt:D7U2N7	EMBL:FN596502	GO:GO:0003674	GO:GO:0005215
GO:GO:0005452	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810
GO:GO:0006820	GO:GO:0008150	GO:GO:0008509	GO:GO:0009987	GO:GO:0015698	GO:GO:0016020
GO:GO:0016021	GO:GO:0019725	GO:GO:0051453	GO:GO:0098656	InterPro:HCO3_transpt_C	InterPro:HCO3_transpt_euk
EntrezGene:LOC100247044	wikigene:LOC100247044	PFAM:PF00955	PANTHER:PTHR11453	PANTHER:PTHR11453:SF80	TMHMM:TMhelix
UniParc:UPI0001BE4739	ArrayExpress:VIT_07s0005g02060	EnsemblPlantsGene:VIT_07s0005g02060	EnsemblPlants:VIT_07s0005g02060.t01	unigene:Vvi.23675	RefSeq:XP_002272575
RefSeq:XP_002272575.1	RefSeq:XP_010652294.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:+:4481998..4485745

Molecular Weight (calculated)

79865.1 Da

IEP (calculated)

9.232

GRAVY (calculated)

0.174

Length

717 amino acids

Sequence
(BLAST)

001: MEETFVPFRG IKNDLRGRLM CYKQDWAGGF RAGFRILAPT TYIFFASAIP VISFGEQLER NTEGVLTAVQ TLASTAICGI IHSIIGGQPL LILGVAEPTV
101: IMYTFMFNFA KERPDLGRKL FLAWTGWVCV WTAFLLFLLA ILGACSIINR FTRVAGELFG LLIAMLFMQQ AIKGIVDEFR IPKQENAKLT EFIPSWRFAN
201: GMFALVLSFG LLLTALRSRK ARSWRYGTGW LRSLIADYGV PLMVLIWTAV SYIPAGSVPK GIPRRLVSPN PWSPGAYENW TVIKDMLDVP VLYIVGAFIP
301: ATMIAVLYYF DHSVASQLAQ QKEFNLRKPP SFHYDLLLLG FLTIMCGLIG IPPSNGVIPQ SPMHTKSLAT LKHQLLRNRL VATARISMRK NSSLSQLYGN
401: MQEAYQQMQT PLIYQEPSAR GLKELKESTI QLASSMGAID APVDETVFDV EKEIDDLLPV EVKEQRLSNL LQAAAVGGCV AAMPILKMIP TSVLWGYFAF
501: MAIESLPGNQ FWERILLLFT APSRRYKVLE EYHATFVETV PFKSIATFTI FQTAYLLICF GITWVPIAGL LFPLMIMLLV PVRQYFLPKF FKGAHLQDLD
601: AAEYEEAPAL PFNLAMEGEM GAGASLAEGG EILDEIITRS RGEIRHMCSP KITSSTATPT KDPRNFQSPR LSEKAYSPRV SELRGEHSPQ SSGRGKYSPK
701: TGEVKPSNLG KSPHSSN

Best Arabidopsis Sequence Match ( AT3G62270.1 )
(BLAST)

001: MEETFVPFEG IKNDLKGRLM CYKQDWTGGI KAGFRILAPT TYIFFASAIP VISFGEQLER STDGVLTAVQ TLASTAICGI IHSIIGGQPL LILGVAEPTV
101: IMYTFMFNFA KGRPELGRNL FLAWSGWVCV WTSLILFVLA ICGACSFINR FTRVAGELFG LLIAMLFMQQ AIKGLVDEFR APAREDLKLV EFLPSWRFAN
201: GMFALVLSFG LLITALRSRK ARSWRYGTGW LRSLVADYGV PLMVLVWTGV SYIPTGDVPK GIPRRLFSPN PWSPGAYENW TVVKEMLQVP IVYIIGAFIP
301: ATMIAVLYYF DHSVASQLAQ QKEFNLRKPS SYHYDLLLLG FLTLMCGLLG IPPSNGVIPQ SPMHTKSLAT LKYQLLRNRL VATARKSIKQ NASLGQLYGN
401: MQDVYNQMQT PLVYQQPQGL KELRESTIQA TTFTGNLDAP VDETLFDIEK EIDDLLPIEV KEQRVSNLLQ AVMVGGCVAA MPLLKMIPTS VLWGYFAFMA
501: IESLPGNQFW ERILLLFTAP SRRFKVLEDN HATFVETVPF KTIAMFTIFQ TTYLLTCFGL TWIPIAGVMF PLLIMFLIPV RQYILPRFFK SAHLQDLDAA
601: EYEEAPALPF HLAVPEAEMG STASYPCDSE ILDEFITRSR GEFRHTCSPK VTSSTSTPVY NRNLSQVFSP RVIDLRGEMS PRLSGKGQNS PKPSPLNPSS
701: SSK

Arabidopsis Description

BOR2Probable boron transporter 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1P7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.