CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
golgi 1
mitochondrion 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	golgi, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

plasma membrane: 28545156

gfp PMID: 28545156 doi

Q Zhang, H Chen, M He, Z Zhao, H Cai, G Ding, L Shi, F Xu

Microelement Research Center, Huazhong Agricultural University, Wuhan, 430070, China., National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021386.1-P	Field mustard	plasma membrane	99.29	99.43
CDY27507	Canola	plasma membrane	99.15	99.15
CDX80082	Canola	plasma membrane	97.86	97.59
CDY37790	Canola	plasma membrane	97.29	97.02
CDX83341	Canola	plasma membrane	95.87	95.6
CDY50920	Canola	plasma membrane	95.44	95.17
AT2G47160.2	Thale cress	plasma membrane	96.58	93.0
CDX93980	Canola	plasma membrane	90.6	90.08
CDY69873	Canola	golgi, plasma membrane	60.68	86.94
VIT_07s0005g02060.t01	Wine grape	plasma membrane	81.77	80.06
KXG23716	Sorghum	plasma membrane	78.63	77.86
Os12t0566000-02	Rice	plasma membrane	78.35	77.36
PGSC0003DMT400013372	Potato	plasma membrane	79.2	77.22
Solyc01g079150.2.1	Tomato	plasma membrane	79.06	77.08
TraesCS5A01G085200.1	Wheat	plasma membrane	77.92	76.83
TraesCS5B01G091200.1	Wheat	plasma membrane	77.64	76.54
TraesCS5D01G097600.1	Wheat	plasma membrane	77.64	76.54
GSMUA_Achr3P12750_001	Banana	plasma membrane	78.21	76.36
HORVU5Hr1G022140.1	Barley	cytosol, golgi, plasma membrane	77.35	76.26
GSMUA_Achr3P24480_001	Banana	golgi, peroxisome, plasma membrane	77.35	75.52
CDY37789	Canola	endoplasmic reticulum, golgi	21.79	68.61
CDY37788	Canola	cytosol	11.82	68.03
CDX74103	Canola	plasma membrane	69.94	66.53
CDY08050	Canola	plasma membrane	69.8	66.49
CDY39649	Canola	plasma membrane	55.84	58.07
CDY68117	Canola	plasma membrane	54.27	55.78
CDY37274	Canola	plasma membrane	54.27	55.78
CDY13492	Canola	plasma membrane	51.42	54.7
CDX88179	Canola	plasma membrane	52.14	54.46
CDX72362	Canola	plasma membrane	51.28	54.46
CDX80510	Canola	plasma membrane	51.99	54.4
CDX68852	Canola	plasma membrane	51.85	54.33
CDY46028	Canola	cytosol, golgi, plasma membrane	38.32	50.47
Zm00001d010317_P001	Maize	cytosol, golgi, plastid	11.68	46.33
CDX75250	Canola	plastid	51.42	29.71
Zm00001d050809_P001	Maize	cytosol	5.7	28.99
Zm00001d000089_P001	Maize	cytosol	9.12	27.47
CDY36563	Canola	plasma membrane	55.84	24.95
Zm00001d030297_P001	Maize	plastid	17.24	23.59
CDX68853	Canola	plastid	0.14	0.19

Protein Annotations

MapMan:24.2.3.6	GO:A0A078IPR5	UniProt:A0A078IPR5	EnsemblPlants:CDY51414	ProteinID:CDY51414	ProteinID:CDY51414.1
GO:GO:0003674	GO:GO:0005215	GO:GO:0005452	GO:GO:0005575	GO:GO:0006810	GO:GO:0006820
GO:GO:0008150	GO:GO:0015698	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00003348001	InterPro:HCO3_transpt_C
InterPro:HCO3_transpt_euk	PFAM:PF00955	PANTHER:PTHR11453	PANTHER:PTHR11453:SF51	TMHMM:TMhelix	UniParc:UPI0004EE9C7F
SEG:seg	:	:	:	:	:

Description

BnaA04g26910DBnaA04g26910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IPR5]

Coordinates

chrLK032993:-:598..3981

Molecular Weight (calculated)

78334.9 Da

IEP (calculated)

8.563

GRAVY (calculated)

0.195

Length

702 amino acids

Sequence
(BLAST)

001: MEETFVPFEG IKNDLKGRLM CYKQDWTGGF KAGFRILAPT TYIFFASAIP VISFGEQLER NTDGVLTAVQ TLASTAICGI IHSVIGGQPL LILGVAEPTV
101: IMYTFMFNFA KARPELGRDL FLAWSGWVCV WTALMLFVMA ICGACSIINR FTRVAGELFG LLIAMLFMQQ AIKGLVDEFR IPERENEKLK EFLPSWRFAN
201: GMFALVLSFG LLLTGLRSRK ARSWRYGTAG WLRSLVADYG VPLMVLVWTG VSYIPSGDVP KGIPRRLFSP NPWSPGAYGN WTVVQEMLDV PVVYIIGAFI
301: PASMIAVLYY FDHSVASQLA QQKEFNLRKP SSYHYDLLLL GFLTLMCGLL GVPPSNGVIP QSPMHTKSLA TLKYQLLRNR LVATARKSIK TNASLGQLYN
401: NMQEAYHHMQ TPLVYQQPQG LKELKESTIQ ATTFTGNLNA PVDETLFDIE KEIDDLLPVE VKEQRVSNFL QSTMVGGCVA AMPILKMIPT SVLWGYFAFM
501: AIESLPGNQF WERILLLFTA PSRRFKVLED YHATFVETVP FKAIAMFTVF QTVYLLICFG LTWIPIAGVM FPLMIMFLIP VRQYILPRFF KGAHLQDLDA
601: AEYEEAPALP FNLAAETEIG STTSYPGDSE ILDEVITRSR GEFRHTSSPK VTSSSSTPLN NRSLSSPRVG EIRLSQMSPR VVGNSPKPAS CGRSPLNQSS
701: LN

Best Arabidopsis Sequence Match ( AT2G47160.1 )
(BLAST)

001: MEETFVPFEG IKNDLKGRLM CYKQDWTGGF KAGFRILAPT TYIFFASAIP VISFGEQLER STDGVLTAVQ TLASTAICGM IHSIIGGQPL LILGVAEPTV
101: IMYTFMFNFA KARPELGRDL FLAWSGWVCV WTALMLFVLA ICGACSIINR FTRVAGELFG LLIAMLFMQQ AIKGLVDEFR IPERENQKLK EFLPSWRFAN
201: GMFALVLSFG LLLTGLRSRK ARSWRYGTGW LRSLIADYGV PLMVLVWTGV SYIPAGDVPK GIPRRLFSPN PWSPGAYGNW TVVKEMLDVP IVYIIGAFIP
301: ASMIAVLYYF DHSVASQLAQ QKEFNLRKPS SYHYDLLLLG FLTLMCGLLG VPPSNGVIPQ SPMHTKSLAT LKYQLLRNRL VATARRSIKT NASLGQLYDN
401: MQEAYHHMQT PLVYQQPQGL KELKESTIQA TTFTGNLNAP VDETLFDIEK EIDDLLPVEV KEQRVSNLLQ STMVGGCVAA MPILKMIPTS VLWGYFAFMA
501: IESLPGNQFW ERILLLFTAP SRRFKVLEDY HATFVETVPF KTIAMFTLFQ TTYLLICFGL TWIPIAGVMF PLMIMFLIPV RQYLLPRFFK GAHLQDLDAA
601: EYEEAPALPF NLAAETEIGS TTSYPGDLEI LDEVMTRSRG EFRHTSSPKV TSSSSTPVNN RSLSQVFSPR VSGIRLGQMS PRVVGNSPKP ASCGRSPLNQ
701: SSSN

Arabidopsis Description

BOR1HCO3-transporter family [Source:UniProtKB/TrEMBL;Acc:A8MS82]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.