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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • cytosol 1
  • plastid 7
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, plastid
BaCelLo:cytosol
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX75250 Canola plastid 98.11 42.72
Solyc08g066960.2.1 Tomato plasma membrane 8.51 5.53
Zm00001d048447_P002 Maize cytosol 5.48 3.34
TraesCS1A01G117500.3 Wheat plasma membrane 3.21 2.21
TraesCS1B01G137300.2 Wheat mitochondrion, plasma membrane 3.02 2.12
TraesCS1D01G118600.2 Wheat plasma membrane 2.84 1.96
CDY37788 Canola cytosol 0.38 1.64
HORVU1Hr1G025890.7 Barley plastid 2.08 1.4
Zm00001d042982_P001 Maize plasma membrane 0.76 0.61
GSMUA_Achr5P06140_001 Banana plasma membrane 0.76 0.6
CDY68117 Canola plasma membrane 0.57 0.44
CDY37274 Canola plasma membrane 0.57 0.44
TraesCS7B01G475400.1 Wheat plasma membrane 0.38 0.3
CDY13492 Canola plasma membrane 0.38 0.3
CDX72362 Canola plasma membrane 0.38 0.3
OQU86222 Sorghum plasma membrane 0.38 0.3
KRH05103 Soybean plasma membrane 0.38 0.3
HORVU3Hr1G023560.1 Barley plasma membrane 0.38 0.3
HORVU3Hr1G023480.4 Barley plasma membrane 0.38 0.3
TraesCS3A01G126300.1 Wheat golgi 0.38 0.3
TraesCS4D01G326900.1 Wheat plasma membrane 0.38 0.3
TraesCS5A01G501500.1 Wheat plasma membrane 0.38 0.3
TraesCS4B01G330000.1 Wheat plasma membrane 0.38 0.3
CDX68852 Canola plasma membrane 0.38 0.3
Zm00001d039647_P001 Maize plasma membrane 0.38 0.3
Os01t0175700-01 Rice plasma membrane 0.38 0.3
HORVU4Hr1G081330.4 Barley plasma membrane 0.38 0.3
AT4G32510.2 Thale cress plasma membrane 0.38 0.3
TraesCS3B01G145500.3 Wheat plasma membrane 0.38 0.3
TraesCS3D01G127300.4 Wheat plasma membrane 0.38 0.28
PGSC0003DMT400074816 Potato plasma membrane 0.19 0.15
GSMUA_Achr2P19680_001 Banana plasma membrane 0.19 0.15
VIT_04s0008g04980.t01 Wine grape plasma membrane 0.19 0.15
CDX80510 Canola plasma membrane 0.19 0.15
CDX88179 Canola plasma membrane 0.19 0.15
Os01t0175600-01 Rice plasma membrane 0.19 0.15
CDY39649 Canola plasma membrane 0.19 0.15
CDY51414 Canola plasma membrane 0.19 0.14
CDY27507 Canola plasma membrane 0.19 0.14
CDX80082 Canola plasma membrane 0.19 0.14
CDX83341 Canola plasma membrane 0.19 0.14
CDY50920 Canola plasma membrane 0.19 0.14
CDY37790 Canola plasma membrane 0.19 0.14
CDX93980 Canola plasma membrane 0.19 0.14
CDY08050 Canola plasma membrane 0.19 0.14
CDX74103 Canola plasma membrane 0.19 0.14
CDY36563 Canola plasma membrane 0.19 0.06
Os05t0176800-01 Rice plasma membrane 0.0 0.0
KXG21448 Sorghum plasma membrane 0.0 0.0
KRH61813 Soybean plasma membrane 0.0 0.0
KRH52492 Soybean plasma membrane 0.0 0.0
CDY37789 Canola endoplasmic reticulum, golgi 0.0 0.0
HORVU0Hr1G032340.2 Barley plasma membrane 0.0 0.0
Zm00001d009789_P006 Maize plasma membrane 0.0 0.0
CDY46028 Canola cytosol, golgi, plasma membrane 0.0 0.0
CDY69873 Canola golgi, plasma membrane 0.0 0.0
Protein Annotations
KEGG:00260+2.1.2.1KEGG:00460+2.1.2.1KEGG:00630+2.1.2.1KEGG:00670+2.1.2.1KEGG:00680+2.1.2.1MapMan:1.3.5
Gene3D:3.40.640.10Gene3D:3.90.1150.10GO:A0A078C163EnsemblPlants:CDX68853ProteinID:CDX68853ProteinID:CDX68853.1
GO:GO:0003674GO:GO:0003824GO:GO:0004372GO:GO:0005488GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0016740GO:GO:0019264GO:GO:0030170GO:GO:0035999
EnsemblPlantsGene:GSBRNA2T00130577001InterPro:IPR015421InterPro:IPR015422HAMAP:MF_00051PFAM:PF00464PIRSF:PIRSF000412
ScanProsite:PS00096PANTHER:PTHR11680PANTHER:PTHR11680:SF20MetaCyc:PWY-1622MetaCyc:PWY-181MetaCyc:PWY-2161
MetaCyc:PWY-2201MetaCyc:PWY-3661MetaCyc:PWY-3661-1MetaCyc:PWY-3841MetaCyc:PWY-5497InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_dom1InterPro:PyrdxlP-dep_Trfase_majorSUPFAM:SSF53383InterPro:Ser_HO-MeTrfaseInterPro:Ser_HO-MeTrfase_PLP_BSUniPathway:UPA00193
UniPathway:UPA00288UniParc:UPI0004EED034::::
Description
BnaC01g06000D
Coordinates
chrLK031789:-:1575365..1578499
Molecular Weight (calculated)
57776.8 Da
IEP (calculated)
8.448
GRAVY (calculated)
-0.145
Length
529 amino acids
Sequence
(BLAST)
001: MEACCGATSM GSLQQSGGVK GPVFAPVMSP VNKFSQQLKF NFAGPNRSLF LKRSLVVEKR ASQVSVPAVE TSSNEIPFED YGRSEVDPEV DEIIKKEKNR
101: QFRSLELIAS ENFTSRAVME TVGSCLTNKY SEGLPGKRYY GGNEFIDQLE TLCQNRALAT FRLDSTKWGV NVQPLSGSPA NFAVYTAILK PHDRIMGLDL
201: PHGGHLSHGF MTAKRRVSGT SIYFESMPYR LDESTGIVDY DMLEKTAVLF RPKLIIAGAS AYSRDFDYPR MRKIADSVGA FLMMDMAHIS GLVAASVVAD
301: PFEYCDIVTT TTHKSLRGPR GGMIFFKKDP VNGVELESAI NNAVFPGLQG GPHNHTIGGL AVCLKHAQSP EFKAYQKRVV ANCRALANRL VELGFDLVSG
401: GSDNHLVLVD LRPLGMDGAR VEKILDMASI TLNKNSVPGD KSALVPGGIR IGTPAMTTRG LTEKDFVVVA DLIKEGVEIT MEAKKLVSGT KLGEFTKLVT
501: SPEFPLREKV ESLKERVESF TSRFPLPGV
Best Arabidopsis Sequence Match ( AT4G32520.1 )
(BLAST)
001: MQACCGGNSM ASLQQPGRVQ GSVFPPIMPP VTKFSQQLKF NISKPFRSSF LKRNLVSEMR ASSVSLPNVE ISSKEIPFED YGLGEVDPEV RTIITKEKDR
101: QFRSLELIAS ENFTSRAVME AVGSCLTNKY SEGLPGKRYY GGNEYIDQLE TLCQNRALAA FRLDSTKWGV NVQPLSGSPA NFAVYTAILS PHDRIMGLDL
201: PHGGHLSHGF MTAKRRVSGT SIYFESMPYR LDESTGIVDY DMLEKTATLF RPKLIIAGAS AYSRDFDYPR MRKIADSVGA FLMMDMAHIS GLVAASVVAD
301: PFEYCDIVTT TTHKSLRGPR GGMIFFRKDP INGVDLESAV NNAVFPGLQG GPHNHTIGGL AVCLKHAQSP EFKAYQKRVV SNCRALANRL VELGFKLVSG
401: GSDNHLVLVD LRPMGMDGAR VEKILDMASI TLNKNSVPGD KSALVPGGIR IGSPAMTTRG LSEKDFVVVA DFIKEGVEIT MEAKKAAPGS KLQDFNKFVT
501: SPEFPLKERV KSLKERVETF TSRFPIPGV
Arabidopsis Description
SHM3Serine hydroxymethyltransferase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94JQ3]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.