CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

nucleus 2
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37788	Canola	cytosol	16.59	30.33
CDY69873	Canola	golgi, plasma membrane	66.37	30.2
CDY37790	Canola	plasma membrane	71.3	22.59
CDX80082	Canola	plasma membrane	70.85	22.44
CDY50920	Canola	plasma membrane	69.96	22.16
CDX83341	Canola	plasma membrane	69.96	22.16
CDY51414	Canola	plasma membrane	68.61	21.79
CDY27507	Canola	plasma membrane	68.61	21.79
CDX93980	Canola	plasma membrane	66.82	21.1
VIT_07s0005g02060.t01	Wine grape	plasma membrane	57.4	17.85
GSMUA_Achr3P24480_001	Banana	golgi, peroxisome, plasma membrane	52.91	16.41
Solyc01g079150.2.1	Tomato	plasma membrane	52.91	16.39
PGSC0003DMT400013372	Potato	plasma membrane	52.91	16.39
TraesCS5A01G085200.1	Wheat	plasma membrane	50.22	15.73
TraesCS5B01G091200.1	Wheat	plasma membrane	50.22	15.73
TraesCS5D01G097600.1	Wheat	plasma membrane	50.22	15.73
KXG23716	Sorghum	plasma membrane	49.78	15.66
HORVU5Hr1G022140.1	Barley	cytosol, golgi, plasma membrane	49.33	15.45
Os12t0566000-02	Rice	plasma membrane	48.88	15.33
GSMUA_Achr3P12750_001	Banana	plasma membrane	49.33	15.3
CDY08050	Canola	plasma membrane	47.53	14.38
CDX74103	Canola	plasma membrane	47.53	14.36
CDY46028	Canola	cytosol, golgi, plasma membrane	33.18	13.88
CDY13492	Canola	plasma membrane	34.53	11.67
CDX72362	Canola	plasma membrane	34.53	11.65
CDX68852	Canola	plasma membrane	34.98	11.64
CDX80510	Canola	plasma membrane	34.08	11.33
CDX88179	Canola	plasma membrane	34.08	11.31
CDY68117	Canola	plasma membrane	33.18	10.83
CDY37274	Canola	plasma membrane	33.18	10.83
CDY39649	Canola	plasma membrane	32.74	10.81
CDX75250	Canola	plastid	34.53	6.34
CDY36563	Canola	plasma membrane	33.18	4.71
Zm00001d030297_P001	Maize	plastid	0.0	0.0
Zm00001d050809_P001	Maize	cytosol	0.0	0.0
Zm00001d010317_P001	Maize	cytosol, golgi, plastid	0.0	0.0
Zm00001d000089_P001	Maize	cytosol	0.0	0.0
KRH74995	Soybean	extracellular	0.0	0.0
CDX68853	Canola	plastid	0.0	0.0

Protein Annotations

MapMan:24.2.3.6	GO:A0A078HKF4	UniProt:A0A078HKF4	EnsemblPlants:CDY37789	ProteinID:CDY37789	ProteinID:CDY37789.1
GO:GO:0003674	GO:GO:0005215	GO:GO:0005452	GO:GO:0005575	GO:GO:0006810	GO:GO:0006820
GO:GO:0008150	GO:GO:0015698	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00064724001	InterPro:HCO3_transpt_C
InterPro:HCO3_transpt_euk	PFAM:PF00955	PANTHER:PTHR11453	PANTHER:PTHR11453:SF51	UniParc:UPI0004EEA15A	SEG:seg

Description

BnaC04g00360DBnaC04g00360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HKF4]

Coordinates

chrLK032408:-:192297..193403

Molecular Weight (calculated)

24967.7 Da

IEP (calculated)

6.886

GRAVY (calculated)

-0.153

Length

223 amino acids

Sequence
(BLAST)

001: MVGGCVAAMP ILKMIPTSLL WGYFAFMAIE SLPGNQFWER ILFLFTAPSR RFKVPEDYHA TFIEAVPFRT IAMFTPNGLS VNLLWSHMDP NSRSHVPFND
101: HVLDSSEYEE APALPFNLAA LLLFFYPLHF NFEQETEIGS TTSYPGDSEI LDEVITRSRG EFRHTSSHKV TSSSSTPVNN RSLSQVFSPR VGELRFGQMS
201: PRVVGNSPKP ACGRSPLNQS SSK

Best Arabidopsis Sequence Match ( AT2G47160.1 )
(BLAST)

001: MEETFVPFEG IKNDLKGRLM CYKQDWTGGF KAGFRILAPT TYIFFASAIP VISFGEQLER STDGVLTAVQ TLASTAICGM IHSIIGGQPL LILGVAEPTV
101: IMYTFMFNFA KARPELGRDL FLAWSGWVCV WTALMLFVLA ICGACSIINR FTRVAGELFG LLIAMLFMQQ AIKGLVDEFR IPERENQKLK EFLPSWRFAN
201: GMFALVLSFG LLLTGLRSRK ARSWRYGTGW LRSLIADYGV PLMVLVWTGV SYIPAGDVPK GIPRRLFSPN PWSPGAYGNW TVVKEMLDVP IVYIIGAFIP
301: ASMIAVLYYF DHSVASQLAQ QKEFNLRKPS SYHYDLLLLG FLTLMCGLLG VPPSNGVIPQ SPMHTKSLAT LKYQLLRNRL VATARRSIKT NASLGQLYDN
401: MQEAYHHMQT PLVYQQPQGL KELKESTIQA TTFTGNLNAP VDETLFDIEK EIDDLLPVEV KEQRVSNLLQ STMVGGCVAA MPILKMIPTS VLWGYFAFMA
501: IESLPGNQFW ERILLLFTAP SRRFKVLEDY HATFVETVPF KTIAMFTLFQ TTYLLICFGL TWIPIAGVMF PLMIMFLIPV RQYLLPRFFK GAHLQDLDAA
601: EYEEAPALPF NLAAETEIGS TTSYPGDLEI LDEVMTRSRG EFRHTSSPKV TSSSSTPVNN RSLSQVFSPR VSGIRLGQMS PRVVGNSPKP ASCGRSPLNQ
701: SSSN

Arabidopsis Description

BOR1HCO3-transporter family [Source:UniProtKB/TrEMBL;Acc:A8MS82]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.