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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • cytosol 1
  • golgi 1
  • mitochondrion 1
  • plasma membrane 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, golgi, plasma membrane
BaCelLo:cytosol
MultiLoc:golgi
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX72362 Canola plasma membrane 93.73 95.01
CDY13492 Canola plasma membrane 93.58 95.0
AT4G32510.2 Thale cress plasma membrane 91.79 91.11
PGSC0003DMT400074816 Potato plasma membrane 66.57 67.99
KRH52492 Soybean plasma membrane 66.27 67.79
KRH61813 Soybean plasma membrane 66.57 67.37
VIT_04s0008g04980.t01 Wine grape plasma membrane 67.01 67.12
CDX88179 Canola plasma membrane 67.16 66.96
CDX80510 Canola plasma membrane 66.72 66.62
KRH05103 Soybean plasma membrane 64.48 65.16
CDY39649 Canola plasma membrane 65.37 64.89
GSMUA_Achr2P19680_001 Banana plasma membrane 63.58 64.06
Os01t0175700-01 Rice plasma membrane 63.43 63.24
Os01t0175600-01 Rice plasma membrane 63.28 63.1
HORVU3Hr1G023560.1 Barley plasma membrane 62.69 63.06
HORVU3Hr1G023480.4 Barley plasma membrane 62.69 63.06
OQU86222 Sorghum plasma membrane 62.39 63.05
CDY37274 Canola plasma membrane 63.88 62.66
CDY68117 Canola plasma membrane 63.88 62.66
TraesCS3A01G126300.1 Wheat golgi 62.09 62.46
Os05t0176800-01 Rice plasma membrane 62.84 62.19
Zm00001d039647_P001 Maize plasma membrane 62.09 62.09
TraesCS3B01G145500.3 Wheat plasma membrane 62.54 62.07
TraesCS4B01G330000.1 Wheat plasma membrane 61.64 61.92
TraesCS4D01G326900.1 Wheat plasma membrane 61.34 61.71
TraesCS5A01G501500.1 Wheat plasma membrane 61.34 61.62
TraesCS7B01G475400.1 Wheat plasma membrane 60.6 61.52
GSMUA_Achr5P06140_001 Banana plasma membrane 61.19 61.47
HORVU4Hr1G081330.4 Barley plasma membrane 61.64 61.37
CDY46028 Canola cytosol, golgi, plasma membrane 47.46 59.66
KXG21448 Sorghum plasma membrane 60.9 59.39
HORVU0Hr1G032340.2 Barley plasma membrane 44.48 58.78
Zm00001d009789_P006 Maize plasma membrane 60.6 58.17
TraesCS3D01G127300.4 Wheat plasma membrane 60.75 57.4
Zm00001d042982_P001 Maize plasma membrane 55.07 55.82
Solyc08g066960.2.1 Tomato plasma membrane 66.57 54.79
TraesCS1B01G137300.2 Wheat mitochondrion, plasma membrane 61.49 54.71
CDX75250 Canola plastid 98.51 54.32
TraesCS1D01G118600.2 Wheat plasma membrane 61.94 54.11
TraesCS1A01G117500.3 Wheat plasma membrane 62.09 54.1
CDX93980 Canola plasma membrane 55.07 52.27
HORVU1Hr1G025890.7 Barley plastid 60.75 51.91
CDY51414 Canola plasma membrane 54.33 51.85
CDY27507 Canola plasma membrane 54.33 51.85
CDY37790 Canola plasma membrane 54.48 51.85
CDX80082 Canola plasma membrane 54.33 51.7
CDY50920 Canola plasma membrane 54.18 51.56
CDX83341 Canola plasma membrane 54.03 51.42
CDX74103 Canola plasma membrane 51.49 46.75
CDY08050 Canola plasma membrane 51.34 46.68
CDY69873 Canola golgi, plasma membrane 33.58 45.92
CDY37788 Canola cytosol 7.16 39.34
Zm00001d048447_P002 Maize cytosol 46.12 35.6
CDY37789 Canola endoplasmic reticulum, golgi 11.64 34.98
CDY36563 Canola plasma membrane 65.52 27.94
CDX68853 Canola plastid 0.3 0.38
Protein Annotations
EnsemblPlants:CDX68852EnsemblPlantsGene:GSBRNA2T00130576001GO:A0A078BX29GO:GO:0003674GO:GO:0005215GO:GO:0005452
GO:GO:0005575GO:GO:0006810GO:GO:0006820GO:GO:0008150GO:GO:0016020GO:GO:0016021
InterPro:HCO3_transpt_CInterPro:HCO3_transpt_eukPANTHER:PTHR11453PANTHER:PTHR11453:SF40PFAM:PF00955ProteinID:CDX68852
ProteinID:CDX68852.1SEG:segTMHMM:TMhelixUniParc:UPI0004EEE772MapMan:24.2.3.6:
Description
BnaC01g06010D
Coordinates
chrLK031789:-:1571827..1575134
Molecular Weight (calculated)
75399.7 Da
IEP (calculated)
7.568
GRAVY (calculated)
0.226
Length
670 amino acids
Sequence
(BLAST)
001: MEGVNTPFAG IINDFNGRRK CYKQDWLAAF NSGVRILAPT LYIFIASALP VIAFGEQLSR ETDRSLGIVE SLASTAICGI IHSIFGGQPL LIVGVAEPTI
101: IMYTYLHCFS KGRPELGQKL YLAWAGWVCV WTAVLLILLA TLNAANIISR FTRIAGELFG MLITVLFFQE AVKGLLGEFL VPKSEDPSLE VYQSQWRYTN
201: GLLAVIFSFG LLYTALKSRR ARSWRYGFRW MRGFTGDYGT LLMLVLWSAL SFTVPRDIPE GVPRRLELPL PWDSESLYHW TVVKDMGKVP PLYILAAFIP
301: AIMIAGLYFF DHCVSAQMAQ QKEFNLKNPS AYHYDIFILG IMTLICGLLG LPPSNGVIPQ SPMHTKSLAV LKRQQMRKKM VQKAKECMKA KASNSEIYGK
401: MQDVFIEMET SPKATSVVKE LENLKEAVMK ADGGGGDTKG KKFDPEVLIE DHLPVRVNEQ RVSNLLQSIL VGLLIFAVPL LRMIPTSVLW GYFTYMAVDS
501: LPGNQFWERL LLLFITPGRR FKVLEGLHAS FMEIVPYKSI VMFTLFQLLY FLICYGVTWI PVGGILFPLP FFFLIALRQY ILPKIFDPSH LQVLDSSEYE
601: EMVGATHSSF GINGEPHNLP MSSVEISEDD FYDAEILDEI TTSRGELKHR TLSAREGTSH MVYPENCGHS
Best Arabidopsis Sequence Match ( AT4G32510.2 )
(BLAST)
001: MEGVKFPFGG IINDFNGRRK CYKQDWLAAF NSGVRILAPT LYIFIASALP VIAFGEQLSR ETDRSLGIAE SLASTALCGI IHSVFGGQPL LIVGVAEPTI
101: IMYTYLHSFS KSRPELGQKL YLAWAGWVCV WTAVLLMLLA MLNACNIISR FTRIAGELFG MLITVLFIQE AVKGLIGEFL VPKSDDPSLE VYQFQWRYTN
201: GLLAVIFSFG LLYTALKSRR ARSWKYGFRW MRGFIGDYGT LLMLVLWSAF SYTVPRNLPE GVPRRLELPL PWASESLYHW TVVKDMAKVP PLYILAAFIP
301: AIMIAGLYFF DHCVSAQMAQ QKEFNLKNPT AYHYDIFILG IMTLICGLLG LPPSNGVIPQ SPMHTKSLAV LKKQQMRKKM VQKAKECMRE KASNSEIYGR
401: MQDVFIEMET SPKATSVVKE LENLKEAVMK ADDGGGETKG KKFDPEVHIE DHLPVRVNEQ RVSNLLQSVL VGLLILAVPV LRMIPTSVLW GYFTYMAVDS
501: LPGNQFWERL QLLFITPGRR FKVLEGLHAS FVEIVPYKSI VMFTLFQLLY FLICYGVTWI PVGGILFPLP FFILIALRQY ILQRLFDPSH LQVLDSSEYE
601: EMVGAPQRNS SFGFNGELRE AHNIPLSVVE NSEDEFYDAE ILDEITTSRG ELKHRTLSVK EDRSQMVYPE NSGHS
Arabidopsis Description
HCO3- transporter family [Source:TAIR;Acc:AT4G32510]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.