Factsheet for VIT_04s0008g04980.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
golgi 1
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0016g04740.t01	Wine grape	plasma membrane	76.23	75.56
KRH52492	Soybean	plasma membrane	72.05	73.59
PGSC0003DMT400074816	Potato	plasma membrane	71.9	73.32
KRH61813	Soybean	plasma membrane	72.35	73.11
GSMUA_Achr2P19680_001	Banana	plasma membrane	71.3	71.73
VIT_09s0002g05810.t01	Wine grape	plasma membrane	72.5	70.6
GSMUA_Achr5P06140_001	Banana	plasma membrane	68.91	69.12
KRH05103	Soybean	plasma membrane	67.86	68.48
CDX88179	Canola	plasma membrane	68.31	68.01
Bra009840.1-P	Field mustard	plasma membrane	67.26	67.98
CDX80510	Canola	plasma membrane	68.01	67.81
CDY13492	Canola	plasma membrane	66.82	67.73
Bra037053.1-P	Field mustard	plasma membrane	66.52	67.53
CDX72362	Canola	plasma membrane	66.67	67.47
TraesCS7B01G475400.1	Wheat	plasma membrane	66.37	67.27
TraesCS3A01G126300.1	Wheat	golgi	66.97	67.27
CDX68852	Canola	plasma membrane	67.12	67.01
OQU86222	Sorghum	plasma membrane	66.37	66.97
HORVU3Hr1G023480.4	Barley	plasma membrane	66.67	66.97
HORVU3Hr1G023560.1	Barley	plasma membrane	66.67	66.97
Os01t0175700-01	Rice	plasma membrane	67.26	66.96
Zm00001d039647_P001	Maize	plasma membrane	66.97	66.87
AT4G32510.2	Thale cress	plasma membrane	67.41	66.81
AT5G25430.1	Thale cress	golgi, peroxisome, plasma membrane	66.97	66.77
TraesCS4D01G326900.1	Wheat	plasma membrane	66.37	66.67
Os01t0175600-01	Rice	plasma membrane	66.97	66.67
TraesCS3B01G145500.3	Wheat	plasma membrane	66.67	66.07
TraesCS4B01G330000.1	Wheat	plasma membrane	65.77	65.97
TraesCS5A01G501500.1	Wheat	plasma membrane	65.32	65.52
HORVU4Hr1G081330.4	Barley	plasma membrane	65.77	65.38
HORVU0Hr1G032340.2	Barley	plasma membrane	48.88	64.5
Os05t0176800-01	Rice	plasma membrane	64.13	63.37
KXG21448	Sorghum	plasma membrane	63.38	61.72
TraesCS3D01G127300.4	Wheat	plasma membrane	65.02	61.35
Zm00001d009789_P006	Maize	plasma membrane	63.08	60.46
Solyc08g066960.2.1	Tomato	plasma membrane	72.5	59.58
Zm00001d042982_P001	Maize	plasma membrane	57.7	58.4
TraesCS1B01G137300.2	Wheat	mitochondrion, plasma membrane	62.18	55.25
VIT_07s0005g02060.t01	Wine grape	plasma membrane	59.04	55.09
TraesCS1D01G118600.2	Wheat	plasma membrane	62.63	54.63
VIT_17s0000g08530.t01	Wine grape	plasma membrane	58.74	54.58
TraesCS1A01G117500.3	Wheat	plasma membrane	62.48	54.36
VIT_05s0020g00440.t01	Wine grape	plasma membrane	57.7	53.84
HORVU1Hr1G025890.7	Barley	plastid	62.63	53.44
Zm00001d048447_P002	Maize	cytosol	49.18	37.9
CDX75250	Canola	plastid	66.82	36.79
CDX68853	Canola	plastid	0.15	0.19

Protein Annotations

EntrezGene:100247413	wikigene:100247413	MapMan:24.2.3.6	ProteinID:CBI20996	ProteinID:CBI20996.3	UniProt:D7SUP7
EMBL:FN595231	GO:GO:0003674	GO:GO:0005215	GO:GO:0005452	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0005887	GO:GO:0006810	GO:GO:0006820	GO:GO:0008150	GO:GO:0008509
GO:GO:0009987	GO:GO:0015698	GO:GO:0016020	GO:GO:0016021	GO:GO:0019725	GO:GO:0051453
GO:GO:0098656	InterPro:HCO3_transpt_C	InterPro:HCO3_transpt_euk	EntrezGene:LOC100247413	wikigene:LOC100247413	PFAM:PF00955
PANTHER:PTHR11453	PANTHER:PTHR11453:SF40	TMHMM:TMhelix	UniParc:UPI0001983061	ArrayExpress:VIT_04s0008g04980	EnsemblPlantsGene:VIT_04s0008g04980
EnsemblPlants:VIT_04s0008g04980.t01	unigene:Vvi.20806	RefSeq:XP_002282436	RefSeq:XP_002282436.1	SEG:seg	:

Description

No Description!

Coordinates

chr4:+:4471170..4475207

Molecular Weight (calculated)

75356.9 Da

IEP (calculated)

7.941

GRAVY (calculated)

0.153

Length

669 amino acids

Sequence
(BLAST)

001: MGNIRVPFKG IINDYKGRAP CYKQDWTGAH GSGVRILAPT FYIFFASALP VIAFGEQLSR ETDGHLSSVQ TLASTAICGI IHSIFGGQPL LILGVAEPTV
101: IMYTYLYNFA KGKSDLGKDL YLAWAGWVCV WTALMLFLLA IFNACTIISR FTRVAGELFG MLIAVLFVQE AIKGVVSEFN IPKDEDPKSV KYEFQWLYTN
201: GLLGIIFSFG VLFTSLKSRR ARSWRYSTGW VREFIADYGV PLMVLLWTAL SYSIPKKVPS GVPRRLFCRA PWDSDSNYQW AVVQDMGKVP LGYIFAALIP
301: AVMIAGLYFF DHSVASQMAQ QKEFNLKNPS AYHYDLFLLG VMTLLCGLLG FPPSNGVLPQ SPMHTKSLAV LKKLLIRKKM VKSAKECIKE QASNSEMYGR
401: MQAVFIEMDT APNDVSVDKE LKDLKEAVMN SEDGGDTKGK FDPEKHIDPY LPVRVNEQRV TNLLQSLLVG ISVCAIPVIK AIPTSVLWGY FAYMAVDSLP
501: GNQFWERILL LFITPGRRYK VLEGVHASFV ETVPFKYIAT FTLFQLVYLM ICFGITWIPI AGILFPVPFF LLISIRQYIL PKLFQTQHLR ELDAAEYEEI
601: AGAPQRSRSI SIREREEAVP GSQGTDEDFF DAEILDEMTT NRGELKLRTV SFNEDRFFQV HPEDTSRTQ

Best Arabidopsis Sequence Match ( AT4G32510.2 )
(BLAST)

001: MEGVKFPFGG IINDFNGRRK CYKQDWLAAF NSGVRILAPT LYIFIASALP VIAFGEQLSR ETDRSLGIAE SLASTALCGI IHSVFGGQPL LIVGVAEPTI
101: IMYTYLHSFS KSRPELGQKL YLAWAGWVCV WTAVLLMLLA MLNACNIISR FTRIAGELFG MLITVLFIQE AVKGLIGEFL VPKSDDPSLE VYQFQWRYTN
201: GLLAVIFSFG LLYTALKSRR ARSWKYGFRW MRGFIGDYGT LLMLVLWSAF SYTVPRNLPE GVPRRLELPL PWASESLYHW TVVKDMAKVP PLYILAAFIP
301: AIMIAGLYFF DHCVSAQMAQ QKEFNLKNPT AYHYDIFILG IMTLICGLLG LPPSNGVIPQ SPMHTKSLAV LKKQQMRKKM VQKAKECMRE KASNSEIYGR
401: MQDVFIEMET SPKATSVVKE LENLKEAVMK ADDGGGETKG KKFDPEVHIE DHLPVRVNEQ RVSNLLQSVL VGLLILAVPV LRMIPTSVLW GYFTYMAVDS
501: LPGNQFWERL QLLFITPGRR FKVLEGLHAS FVEIVPYKSI VMFTLFQLLY FLICYGVTWI PVGGILFPLP FFILIALRQY ILQRLFDPSH LQVLDSSEYE
601: EMVGAPQRNS SFGFNGELRE AHNIPLSVVE NSEDEFYDAE ILDEITTSRG ELKHRTLSVK EDRSQMVYPE NSGHS

Arabidopsis Description

HCO3- transporter family [Source:TAIR;Acc:AT4G32510]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.