Factsheet for VIT_09s0002g05810.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 2
mitochondrion 2
plasma membrane 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09786	Soybean	plasma membrane	74.09	76.08
PGSC0003DMT400014548	Potato	plasma membrane	74.09	75.63
VIT_11s0016g04740.t01	Wine grape	plasma membrane	73.36	74.67
KRH23534	Soybean	plasma membrane	66.38	73.79
PGSC0003DMT400073484	Potato	mitochondrion, plasma membrane	55.6	73.46
Solyc03g120020.2.1	Tomato	plasma membrane	73.8	72.64
VIT_04s0008g04980.t01	Wine grape	plasma membrane	70.6	72.5
GSMUA_Achr2P19680_001	Banana	plasma membrane	67.69	69.92
HORVU3Hr1G023560.1	Barley	plasma membrane	65.21	67.27
HORVU3Hr1G023480.4	Barley	plasma membrane	65.21	67.27
GSMUA_Achr5P06140_001	Banana	plasma membrane	65.21	67.17
OQU86222	Sorghum	plasma membrane	64.77	67.12
Zm00001d039647_P001	Maize	plasma membrane	65.36	67.01
TraesCS3A01G126300.1	Wheat	golgi	64.92	66.97
Os01t0175600-01	Rice	plasma membrane	65.36	66.82
Os01t0175700-01	Rice	plasma membrane	65.07	66.52
TraesCS7B01G475400.1	Wheat	plasma membrane	63.76	66.36
TraesCS3B01G145500.3	Wheat	plasma membrane	64.77	65.93
TraesCS4D01G326900.1	Wheat	plasma membrane	63.9	65.92
TraesCS4B01G330000.1	Wheat	plasma membrane	63.46	65.37
TraesCS5A01G501500.1	Wheat	plasma membrane	63.46	65.37
Os05t0176800-01	Rice	plasma membrane	64.34	65.29
HORVU4Hr1G081330.4	Barley	plasma membrane	63.9	65.23
HORVU0Hr1G032340.2	Barley	plasma membrane	47.31	64.1
KXG21448	Sorghum	plasma membrane	62.88	62.88
Zm00001d009789_P006	Maize	plasma membrane	62.59	61.6
TraesCS3D01G127300.4	Wheat	plasma membrane	63.03	61.07
Zm00001d042982_P001	Maize	plasma membrane	57.35	59.61
TraesCS1B01G137300.2	Wheat	mitochondrion, plasma membrane	62.01	56.57
Solyc06g067900.1.1	Tomato	golgi	28.68	56.45
TraesCS1D01G118600.2	Wheat	plasma membrane	62.45	55.93
TraesCS1A01G117500.3	Wheat	plasma membrane	62.15	55.53
VIT_17s0000g08530.t01	Wine grape	plasma membrane	57.5	54.86
VIT_07s0005g02060.t01	Wine grape	plasma membrane	57.21	54.81
HORVU1Hr1G025890.7	Barley	plastid	61.43	53.83
VIT_05s0020g00440.t01	Wine grape	plasma membrane	56.04	53.7
Zm00001d048447_P002	Maize	cytosol	48.47	38.36

Protein Annotations

EntrezGene:100249812	wikigene:100249812	MapMan:24.2.3.6	ProteinID:CCB59551	ProteinID:CCB59551.1	ncoils:Coil
UniProt:F6HX81	EMBL:FN596494	GO:GO:0003674	GO:GO:0005215	GO:GO:0005452	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810	GO:GO:0006820	GO:GO:0008150
GO:GO:0008509	GO:GO:0009987	GO:GO:0015698	GO:GO:0016020	GO:GO:0016021	GO:GO:0019725
GO:GO:0051453	GO:GO:0098656	InterPro:HCO3_transpt_C	InterPro:HCO3_transpt_euk	EntrezGene:LOC100249812	wikigene:LOC100249812
PFAM:PF00955	PANTHER:PTHR11453	PANTHER:PTHR11453:SF48	TIGR:TC60563	TMHMM:TMhelix	UniParc:UPI000210A786
ArrayExpress:VIT_09s0002g05810	EnsemblPlantsGene:VIT_09s0002g05810	EnsemblPlants:VIT_09s0002g05810.t01	unigene:Vvi.7194	RefSeq:XP_002285279	RefSeq:XP_002285279.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr9:+:5612730..5616661

Molecular Weight (calculated)

77253.7 Da

IEP (calculated)

8.491

GRAVY (calculated)

0.157

Length

687 amino acids

Sequence
(BLAST)

001: MLINQKKFFN ECCHLSISTM EQIKTPFRGI AEDIRGRALC YRQDWTDGIR SRIRILAPTT YIFFASALPV IAFGEQLSRD TDGSLSTVET LASTAICGII
101: HSILGGQPLL ILGVAEPTVI MYTYLYNFAK GRAELGQELF LAWAGWVCVW TALMLFLLAI FNACDIINRF TRIAGELFGM LIAVLFIQEA IKGVVNEFRV
201: PKGEDPKAEK YQFQWLYVNG LLSIIFVFGL LYTALKSRKA RSWLYGTGLF RSFIADYGVP LMVVVWTALS FSVPSKVPSG VPRRLNSPLP WDSESVYHWT
301: VIKDMGNVPP AYIFAAIIPA LMIAGLYFFD HSVASQMAQQ KEFNLKKPSA YHHDILLLGF MTLLCGLLGL PPSNGVLPQS PMHTKSLATL KRQLIRKKMV
401: KSAKESIKQK AANPEIYSNM QAVFIKMDNT QPTKSVVKEL EDLKEAVMKG ENKQANKEEN ATGTFDPEQH IDPYLPVRVN EQRVSNLLQS LLVAAAVFAM
501: PLIKKIPTSV LAGYFAYMAI DSLPGNQFWE RFLLVFITPQ RLYKVKEGVH ASFVDMVPFK SITMFTLFQL AYFMLCFGVT WIPIAGILFP LPFFILIGIR
601: QYILPKFFDS HHLRELDAAE YEEVAVALTG HPLGLSSKEV ESTHSGKAED GMDLSDGEIL DELTTSRGEV KRRTLSFGEE KHAQERY

Best Arabidopsis Sequence Match ( AT1G15460.1 )
(BLAST)

001: MEEERVDSSK RLFRGIVADL RGRALCYKED WVAGLRSGFG ILAPTTYIFF ASALPVIAFG EQLSRDTEGA LSTVETLAST ALCGVIHSIL GGQPLLILGV
101: AEPTVLMYVY LYNFAIGRPE LGKQLYLAWA AWVCVWTALL LFVMAILNTA DIINRFTRVA GELFGMLISV LFIQQAIKGM VSEFGMPKDE DSKLEKYKFE
201: WLYTNGLLGL IFTFGLLYTA LKSRKARSWR YGTGWYRSFI ADYGVPLMVV VWTALSFSTP SKLPSGVPRR LFSPLPWDSP SLSHWTVIKD MGKVSPGYIF
301: AAFIPALMIA GLYFFDHSVA SQLAQQKEFN LKKPSAYHYD ILLLGFMTLI CGLLGLPPSN GVLPQSPMHT KSLAVLKRQL IRRKMVKTAK ESIRKRETSS
401: QVYENMQEVF IEMDKSPLAQ TDPSVIIELQ DLKEAVMKSN DEEREGDEES GFDPEKHLDA YLPVRVNEQR VSNLLQSLLV AGAVLAMPAI KLIPTSILWG
501: YFAYMAIDSL PGNQFFERLT LLFVPTSRRF KVLEGAHASF VEKVPYKSMA AFTLLQIFYF GLCYGVTWIP VAGIMFPVPF FLLIAIRQYI LPKLFNPAHL
601: RELDAAEYEE IPGTPRNPLE LSFRSNDSKR GVQEGDAEIL DELTTSRGEL KVRTLNLNED KGNQIYPKEK VKAGDGDMST TRE

Arabidopsis Description

BOR4BOR4 [Source:UniProtKB/TrEMBL;Acc:A0A178W6Z7]
SUBAcon: [peroxisome,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.