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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • cytosol 1
  • golgi 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 3
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, golgi, plasma membrane
BaCelLo:cytosol
MultiLoc:golgi
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra009840.1-P Field mustard plasma membrane 98.21 99.7
CDX80510 Canola plasma membrane 98.07 98.21
AT5G25430.1 Thale cress golgi, peroxisome, plasma membrane 88.69 88.82
VIT_04s0008g04980.t01 Wine grape plasma membrane 68.01 68.31
CDY13492 Canola plasma membrane 66.82 68.03
PGSC0003DMT400074816 Potato plasma membrane 66.07 67.68
CDX72362 Canola plasma membrane 66.52 67.62
CDX68852 Canola plasma membrane 66.96 67.16
KRH61813 Soybean plasma membrane 65.92 66.92
KRH52492 Soybean plasma membrane 65.18 66.87
GSMUA_Achr2P19680_001 Banana plasma membrane 63.99 64.66
HORVU3Hr1G023560.1 Barley plasma membrane 63.84 64.41
HORVU3Hr1G023480.4 Barley plasma membrane 63.84 64.41
CDY39649 Canola plasma membrane 64.58 64.3
TraesCS3A01G126300.1 Wheat golgi 63.69 64.26
KRH05103 Soybean plasma membrane 63.24 64.1
TraesCS3B01G145500.3 Wheat plasma membrane 63.84 63.56
TraesCS4D01G326900.1 Wheat plasma membrane 62.35 62.91
TraesCS4B01G330000.1 Wheat plasma membrane 62.35 62.82
OQU86222 Sorghum plasma membrane 61.76 62.59
Os01t0175600-01 Rice plasma membrane 62.5 62.5
TraesCS7B01G475400.1 Wheat plasma membrane 61.31 62.42
TraesCS5A01G501500.1 Wheat plasma membrane 61.9 62.37
HORVU4Hr1G081330.4 Barley plasma membrane 62.35 62.26
Zm00001d039647_P001 Maize plasma membrane 61.9 62.09
CDY68117 Canola plasma membrane 63.1 62.08
CDY37274 Canola plasma membrane 63.1 62.08
Os01t0175700-01 Rice plasma membrane 62.05 62.05
GSMUA_Achr5P06140_001 Banana plasma membrane 60.57 61.02
HORVU0Hr1G032340.2 Barley plasma membrane 45.83 60.75
Os05t0176800-01 Rice plasma membrane 60.27 59.82
CDY46028 Canola cytosol, golgi, plasma membrane 47.17 59.47
TraesCS3D01G127300.4 Wheat plasma membrane 62.65 59.38
KXG21448 Sorghum plasma membrane 58.78 57.5
Zm00001d009789_P006 Maize plasma membrane 58.63 56.45
Solyc08g066960.2.1 Tomato plasma membrane 66.22 54.67
Zm00001d042982_P001 Maize plasma membrane 53.42 54.31
TraesCS1B01G137300.2 Wheat mitochondrion, plasma membrane 59.52 53.12
CDX93980 Canola plasma membrane 55.51 52.83
TraesCS1A01G117500.3 Wheat plasma membrane 59.82 52.28
CDX80082 Canola plasma membrane 54.76 52.27
CDY37790 Canola plasma membrane 54.76 52.27
TraesCS1D01G118600.2 Wheat plasma membrane 59.52 52.15
CDY27507 Canola plasma membrane 54.46 52.14
CDY51414 Canola plasma membrane 54.46 52.14
CDY50920 Canola plasma membrane 54.46 51.99
CDX83341 Canola plasma membrane 54.32 51.85
HORVU1Hr1G025890.7 Barley plastid 59.38 50.89
CDY69873 Canola golgi, plasma membrane 34.38 47.14
CDX74103 Canola plasma membrane 51.64 47.02
CDY08050 Canola plasma membrane 51.34 46.81
CDY37788 Canola cytosol 6.85 37.7
CDX75250 Canola plastid 66.82 36.95
Zm00001d048447_P002 Maize cytosol 45.09 34.91
CDY37789 Canola endoplasmic reticulum, golgi 11.31 34.08
CDY36563 Canola plasma membrane 64.43 27.56
CDX68853 Canola plastid 0.15 0.19
Protein Annotations
EnsemblPlants:CDX88179EnsemblPlantsGene:GSBRNA2T00147638001GO:A0A078DI69GO:GO:0003674GO:GO:0005215GO:GO:0005452
GO:GO:0005575GO:GO:0006810GO:GO:0006820GO:GO:0008150GO:GO:0016020GO:GO:0016021
InterPro:HCO3_transpt_CInterPro:HCO3_transpt_eukPANTHER:PTHR11453PANTHER:PTHR11453:SF40PFAM:PF00955ProteinID:CDX88179
ProteinID:CDX88179.1SEG:segTMHMM:TMhelixUniParc:UPI0004EE1DEEMapMan:24.2.3.6:
Description
BnaA06g27700D
Coordinates
chrLK031854:+:1185553..1188909
Molecular Weight (calculated)
75764.2 Da
IEP (calculated)
7.594
GRAVY (calculated)
0.266
Length
672 amino acids
Sequence
(BLAST)
001: MESEGGPFKG ILRDIEGRRK CYKQDWILGF KTGLRILAPT CYIFFASSLP VVAFGEQLSK HTGGSLSAVE TLASTSICGI IHAIFGGQPL LILGVAEPTI
101: MMYTYLYSFC ISRPDLGREL YLAWVAWVCV WTAIFLILLS IFNACTIISR FTRIAGELFG MLIAVLFLQE AIKGLVSEFQ ASKSEHHDKS GESDFLWLYT
201: NGLLAVIFSL GLLITALKSR RAKSWKYGFG WLRSFIGDYG VPLMVLFWTA LSYTVPSKVP ENVPRRLFCP LPWETASLHH WTVIKDMGKV PVIYIFAGII
301: PAVMIAGLYF FDHSVASQMA QQKEFNLKNP SAYHYDIFLL GIMTLICGLL GLPPSNGVIP QAPMHTKSLA ILNRQLTRKK MVKSAKEGMK MKASKSEIYG
401: RMQTVFIEME TSSPQVCSVA NDLKDLKEVV MRPDEGGDTK GKFDPDVHIE ANLPVRVNEQ RVSNLLQSVL VGLTLLAVPV IKMIPSSVLW GYFAYMAIDS
501: LPGNQFWERL LLLFIPQSRL FKVLEGVHAS FVELVPYKVI VMFTLFQLVY FLLCYGMTWV PVAGIFFPAL FFLLISIREH LLPKLFDPQH LQVLDAADYE
601: EIVAAPIQHS SFAYRKLGSS RHLSEGEEED EFHDAEILDE MTTSRGEIRI RTISLKEPRL ESEERRVTFE PH
Best Arabidopsis Sequence Match ( AT5G25430.1 )
(BLAST)
001: MKSEGESGPF QGILRDIEGR RKCYKQDWIR GIKTGIRILA PTCYIFFASS LPVVAFGEQL SKHTGGALSA VETLASTSIC GIIHAIFGGQ PLLIVGVAEP
101: TIIMYTYLYS FCISRPDIGR ELYLAWVAWV CVWTSVLLIL LSIFNAGTII TRFTRIAGEL FGMLIAVLFL QEAIKGLISE FHAPEIKNQE TGKSHFLLIY
201: ANGLLAVIFS LGLLITALKS RRAKSWKYGF GWLRSFIGDY GVPLMVLLWT ALSYTVPSEV LPSVPRRLFC PLPWEPASLY HWTVVKDMGK VPIMYILAAF
301: IPGVMIAGLY FFDHSVASQM AQQKEFNLKN PSAYHYDIFL LGIITLICGL LGLPPSNGVL PQAPMHTKSL AVLNRQLIRK KMVKKAKECM KMKASKSEIY
401: GRMQSVFIEM ETSPPQDNSV ATDLKELKEV VMRPDEGGDT KGKFDPDVHI EANLPVRVNE QRVSNLLQSV LVGLTLLAVT VIKMIPSSVL WGYFAYMAID
501: SLPGNQFWER LLLLFIPPSR LFKVLEGVHA SFVELVPYRV IVTFTLFQLV YFLLCYGMTW IPMAGIFFPA LFFLLISIRE HLLPKLFDMQ HLQVLDASDY
601: EEIVAAPIQH SSFAYRKLGS SHHLSEGEDE FYDAEILDEM TTSRGEIRIR TISFKEVHPE PEEKHVTFEP H
Arabidopsis Description
BOR6Probable boron transporter 6 [Source:UniProtKB/Swiss-Prot;Acc:Q3E954]
SUBAcon: [peroxisome,golgi,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.