Factsheet for VIT_13s0019g05200.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g02140.t01	Wine grape	cytosol, plasma membrane, vacuole	72.09	12.09
Solyc11g065820.1.1	Tomato	cytosol, plasma membrane, vacuole	61.63	10.39
PGSC0003DMT400018991	Potato	cytosol, plasma membrane, vacuole	60.47	10.16
VIT_08s0007g08200.t01	Wine grape	plasma membrane	59.3	10.06
GSMUA_Achr4P06960_001	Banana	plasma membrane	56.98	9.76
VIT_13s0064g00930.t01	Wine grape	plasma membrane	60.47	9.7
CDY29628	Canola	plasma membrane	58.14	9.69
Bra030446.1-P	Field mustard	plasma membrane	58.14	9.67
CDY01220	Canola	plasma membrane	58.14	9.67
CDY66973	Canola	plasma membrane	58.14	9.67
KRH23130	Soybean	plasma membrane	61.63	9.55
AT1G51340.2	Thale cress	plasma membrane	56.98	9.51
GSMUA_Achr3P29780_001	Banana	plasma membrane	56.98	9.46
Bra014272.1-P	Field mustard	plasma membrane	56.98	9.44
CDY03629	Canola	plasma membrane	56.98	9.42
CDY65471	Canola	plasma membrane	56.98	9.42
KRH10205	Soybean	plasma membrane	60.47	9.39
PGSC0003DMT400027815	Potato	cytosol, plasma membrane, vacuole	55.81	9.2
VIT_13s0064g00940.t01	Wine grape	plasma membrane	56.98	8.96
TraesCS1A01G305200.1	Wheat	plasma membrane	51.16	8.85
Solyc01g008420.2.1	Tomato	plasma membrane	54.65	8.77
TraesCS1B01G315900.1	Wheat	plasma membrane	50.0	8.65
TraesCS1D01G304800.1	Wheat	plasma membrane	50.0	8.65
HORVU1Hr1G068960.15	Barley	plasma membrane	51.16	8.54
EES14441	Sorghum	plasma membrane	47.67	7.81
Zm00001d035115_P004	Maize	plasma membrane	47.67	6.67
VIT_08s0058g00510.t01	Wine grape	plastid	32.56	5.02
VIT_03s0038g03200.t01	Wine grape	plastid	34.88	4.97
Zm00001d042411_P001	Maize	plastid	11.63	3.86
VIT_03s0038g00410.t01	Wine grape	cytosol, peroxisome, plasma membrane	18.6	3.14
VIT_03s0038g00430.t01	Wine grape	plastid	18.6	2.82
Zm00001d025649_P001	Maize	plasma membrane	3.49	1.6
Zm00001d007814_P001	Maize	mitochondrion	1.16	0.35
KRG96963	Soybean	plasma membrane	0.0	0.0
Os01t0162101-00	Rice	endoplasmic reticulum, extracellular	0.0	0.0
KRH29719	Soybean	extracellular	0.0	0.0
KRH25702	Soybean	cytosol, peroxisome, plasma membrane, plastid	0.0	0.0

Protein Annotations

ArrayExpress:VIT_13s0019g05200	EMBL:FN595998	EnsemblPlants:VIT_13s0019g05200.t01	EnsemblPlantsGene:VIT_13s0019g05200	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	PANTHER:PTHR42893	PANTHER:PTHR42893:SF11	ProteinID:CCB56134	ProteinID:CCB56134.1	RefSeq:XP_003633482
RefSeq:XP_003633482.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI000210967A	UniProt:F6HNB5	MapMan:35.2

Description

No Description!

Coordinates

chr13:+:7032043..7033416

Molecular Weight (calculated)

9319.5 Da

IEP (calculated)

10.023

GRAVY (calculated)

0.215

Length

86 amino acids

Sequence
(BLAST)

1: MHSSGHDTPK FEHKRHIPSA STALVVGGIF GLIQVIFLTS GAKPILNFME VHSDSPMLTP TQEYLSLRSL SAPSALLSLA MKGIFR

Best Arabidopsis Sequence Match ( AT1G51340.4 )
(BLAST)

001: MMSEDGYNTD FPRNPLYIFF SDFRSVLKFD ELGLEIARIA LPAALALTAD PIASLVDTAF IGQIGPVELA AVGVSIALFN QVSRIAIFPL VSITTSFVAE
101: EDACSSQQDT VRDHKECIEI GINNPTEETI ELIPEKHKDS LSDEFKTSSS IFSISKPPAK KRNIPSASSA LIIGGVLGLF QAVFLISAAK PLLSFMGVKH
201: DSPMMRPSQR YLSLRSLGAP AVLLSLAAQG VFRGFKDTTT PLFATVIGDV TNIILDPIFI FVFRLGVTGA ATAHVISQYL MCGILLWKLM GQVDIFNMST
301: KHLQFCRFMK NGFLLLMRVI AVTFCVTLSA SLAAREGSTS MAAFQVCLQV WLATSLLADG YAVAGQAILA SAFAKKDYKR AAATASRVLQ GHNQLMP

Arabidopsis Description

DTX42Protein DETOXIFICATION [Source:UniProtKB/TrEMBL;Acc:A0A178W9H8]
SUBAcon: [plasma membrane,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.