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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra030446.1-P Field mustard plasma membrane 99.42 99.42
CDY66973 Canola plasma membrane 99.42 99.42
CDY29628 Canola plasma membrane 96.71 96.9
CDY65471 Canola plasma membrane 94.0 93.46
CDY03629 Canola plasma membrane 93.81 93.27
AT1G51340.2 Thale cress plasma membrane 89.56 89.9
Os01t0162101-00 Rice endoplasmic reticulum, extracellular 5.61 76.32
Solyc11g065820.1.1 Tomato cytosol, plasma membrane, vacuole 70.02 70.98
PGSC0003DMT400018991 Potato cytosol, plasma membrane, vacuole 70.21 70.9
VIT_06s0004g02140.t01 Wine grape cytosol, plasma membrane, vacuole 69.83 70.37
PGSC0003DMT400027815 Potato cytosol, plasma membrane, vacuole 67.12 66.48
KRH29719 Soybean extracellular 15.86 65.6
KRH10205 Soybean plasma membrane 69.83 65.16
Solyc01g008420.2.1 Tomato plasma membrane 67.31 64.93
GSMUA_Achr3P29780_001 Banana plasma membrane 64.99 64.86
GSMUA_Achr4P06960_001 Banana plasma membrane 62.86 64.74
KRH23130 Soybean plasma membrane 69.44 64.68
KRH25702 Soybean cytosol, peroxisome, plasma membrane, plastid 25.34 62.98
EES14441 Sorghum plasma membrane 63.64 62.67
TraesCS1A01G305200.1 Wheat plasma membrane 60.15 62.58
TraesCS1D01G304800.1 Wheat plasma membrane 59.96 62.37
TraesCS1B01G315900.1 Wheat plasma membrane 59.57 61.97
HORVU1Hr1G068960.15 Barley plasma membrane 59.57 59.81
VIT_13s0019g05200.t01 Wine grape cytosol 9.67 58.14
CDX74016 Canola extracellular, plasma membrane, vacuole 14.7 55.07
CDX74015 Canola plasma membrane 54.35 54.88
CDX74014 Canola plasma membrane 56.09 54.82
CDY07959 Canola plasma membrane 56.29 54.8
CDY07957 Canola plasma membrane 55.9 54.63
CDY22150 Canola cytosol, plasma membrane, vacuole 55.32 54.17
CDY28001 Canola plasma membrane 54.55 53.21
CDY35980 Canola plasma membrane 54.55 52.61
CDY27977 Canola endoplasmic reticulum, extracellular, plasma membrane 20.12 50.73
Zm00001d035115_P004 Maize plasma membrane 59.38 49.92
KRG96963 Soybean plasma membrane 23.79 45.05
Zm00001d025649_P001 Maize plasma membrane 15.47 42.55
CDY07737 Canola plastid 42.17 40.9
Zm00001d042411_P001 Maize plastid 20.12 40.15
CDY63154 Canola plastid 39.65 40.12
Zm00001d007814_P001 Maize mitochondrion 21.86 39.37
CDY27978 Canola plasma membrane 29.98 33.84
CDY65815 Canola plasma membrane 20.7 24.26
CDY12082 Canola plastid 35.01 23.03
CDX90273 Canola plastid 35.01 23.0
CDX83192 Canola plastid 21.08 20.34
CDX82020 Canola plastid 20.89 19.46
CDY42600 Canola mitochondrion 18.57 17.91
CDY41956 Canola mitochondrion 18.38 17.72
Protein Annotations
MapMan:24.2.4.1.1MapMan:24.2.4.1.3MapMan:25.4.6.1GO:A0A078EGK5EnsemblPlants:CDY01220ProteinID:CDY01220
ProteinID:CDY01220.1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0006855
GO:GO:0008150GO:GO:0015238GO:GO:0015297GO:GO:0016020GO:GO:0016021GO:GO:0055085
EnsemblPlantsGene:GSBRNA2T00111342001InterPro:MATE_famPFAM:PF01554PANTHER:PTHR42893PANTHER:PTHR42893:SF2TIGRFAMs:TIGR00797
TMHMM:TMhelixUniParc:UPI000392125BSEG:seg:::
Description
BnaC05g25120D
Coordinates
chrLK031925:+:109119..112086
Molecular Weight (calculated)
55394.1 Da
IEP (calculated)
7.657
GRAVY (calculated)
0.612
Length
517 amino acids
Sequence
(BLAST)
001: MMSEDGYTKE TPCDFPRNPL CIFLSDFRSV FKFDELGLEI ARIALPAALA LTADPIASLV DTAFIGQIGP VELAAVGVSI ALFNQVSRIA IFPLVSITTS
101: FVAEEDACSS EENTNQDYKE CIETGINNTK EETQELIPGN ISTPDESKNS CSIFSVSDSP VKKRNIPSAS SALIIGAILG LLQAVFLISS AKPLLSFMGV
201: KHDSPMLGPA QRYLSLRSLG APAVLLSLAT QGVFRGFKDT TTPLYATVIG DVTNIILDPI FIFVFRLGVT GAATAHVISQ YLMCGILLWK LMGQVDIFKM
301: STKHLQFCRF MKNGFLLLMR VVAVTFCVTL SASLAAREGP TSMAAFQVCL QVWLATSLLA DGFAVAGQAI LASAFAKKDY KRAAATASRV LQLGLVLGFL
401: LAVILGTGLH FGARLFTKDD KVLHLISIGL PFVAGTQPIN ALAFVFDGVN FGASDFGYAA ASLVMVAIVS VLCLVLLSAT HGFIGLWFGL TIYMSLRAAV
501: GFWRIGTATG PWSFLRR
Best Arabidopsis Sequence Match ( AT1G51340.2 )
(BLAST)
001: MMSEDGYNTD FPRNPLYIFF SDFRSVLKFD ELGLEIARIA LPAALALTAD PIASLVDTAF IGQIGPVELA AVGVSIALFN QVSRIAIFPL VSITTSFVAE
101: EDACSSQQDT VRDHKECIEI GINNPTEETI ELIPEKHKDS LSDEFKTSSS IFSISKPPAK KRNIPSASSA LIIGGVLGLF QAVFLISAAK PLLSFMGVKH
201: DSPMMRPSQR YLSLRSLGAP AVLLSLAAQG VFRGFKDTTT PLFATVIGDV TNIILDPIFI FVFRLGVTGA ATAHVISQYL MCGILLWKLM GQVDIFNMST
301: KHLQFCRFMK NGFLLLMRVI AVTFCVTLSA SLAAREGSTS MAAFQVCLQV WLATSLLADG YAVAGQAILA SAFAKKDYKR AAATASRVLQ LGLVLGFVLA
401: VILGAGLHFG ARVFTKDDKV LHLISIGLPF VAGTQPINAL AFVFDGVNFG ASDFGYAAAS LVMVAIVSIL CLLFLSSTHG FIGLWFGLTI YMSLRAAVGF
501: WRIGTGTGPW SFLRS
Arabidopsis Description
DTX42Protein DETOXIFICATION [Source:UniProtKB/TrEMBL;Acc:A0A178W9H8]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.