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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, vacuole, cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 2
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plasma membrane, vacuole
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70995
CDX88803
CDX92368
CDY09128
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G08040.1 CDX70995 AT5G22290.1 21798944
AT3G08040.1 CDX88803 AT5G22290.1 21798944
AT3G08040.1 CDX92368 AT5G22290.1 21798944
AT3G08040.1 CDY09128 AT5G22290.1 21798944
AT3G08040.1 CDY35676 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra040047.1-P Field mustard cytosol, plasma membrane, vacuole 100.0 100.0
CDX74014 Canola plasma membrane 90.15 89.98
CDX74016 Canola extracellular, plasma membrane, vacuole 23.48 89.86
CDY07957 Canola plasma membrane 89.96 89.79
CDY07959 Canola plasma membrane 89.96 89.45
CDX74015 Canola plasma membrane 85.98 88.67
CDY28001 Canola plasma membrane 84.09 83.77
AT3G08040.1 Thale cress cytosol, plasma membrane, vacuole 83.14 83.46
CDY35980 Canola plasma membrane 84.47 83.21
CDY27977 Canola endoplasmic reticulum, extracellular, plasma membrane 28.41 73.17
KRH27482 Soybean plasma membrane 38.83 64.26
VIT_13s0064g00930.t01 Wine grape plasma membrane 62.31 61.38
VIT_13s0064g00940.t01 Wine grape plasma membrane 63.26 61.06
Solyc01g087150.2.1 Tomato plasma membrane 60.23 60.57
PGSC0003DMT400017700 Potato plasma membrane 60.42 59.4
PGSC0003DMT400017707 Potato cytosol, plasma membrane, vacuole 59.85 58.85
KRH13953 Soybean plasma membrane 60.42 57.69
CDY27978 Canola plasma membrane 50.0 57.64
KRH37984 Soybean cytosol, plasma membrane, vacuole 60.23 57.19
GSMUA_Achr4P06960_001 Banana plasma membrane 53.22 55.98
KRH27481 Soybean plasma membrane 55.3 55.83
CDY29628 Canola plasma membrane 54.36 55.62
GSMUA_Achr3P29780_001 Banana plasma membrane 54.36 55.41
CDY01220 Canola plasma membrane 54.17 55.32
CDY66973 Canola plasma membrane 54.17 55.32
EES14441 Sorghum plasma membrane 53.79 54.1
CDY03629 Canola plasma membrane 53.22 54.04
CDY65471 Canola plasma membrane 53.03 53.85
TraesCS1A01G305200.1 Wheat plasma membrane 50.57 53.72
TraesCS1D01G304800.1 Wheat plasma membrane 50.38 53.52
TraesCS1B01G315900.1 Wheat plasma membrane 50.19 53.32
HORVU1Hr1G068960.15 Barley plasma membrane 50.38 51.65
KRH20827 Soybean cytosol, plasma membrane, vacuole 41.48 51.17
Zm00001d035115_P004 Maize plasma membrane 50.57 43.41
Zm00001d025649_P001 Maize plasma membrane 14.2 39.89
CDY07737 Canola plastid 37.88 37.52
CDY63154 Canola plastid 35.98 37.18
Zm00001d007814_P001 Maize mitochondrion 19.7 36.24
Zm00001d042411_P001 Maize plastid 17.61 35.91
CDY65815 Canola plasma membrane 20.64 24.72
CDY12082 Canola plastid 36.74 24.68
CDX90273 Canola plastid 36.17 24.27
CDX83192 Canola plastid 21.59 21.27
CDX82020 Canola plastid 21.59 20.54
CDY42600 Canola mitochondrion 19.51 19.22
CDY41956 Canola mitochondrion 19.51 19.22
Protein Annotations
MapMan:24.2.4.1.3MapMan:25.4.6.1GO:A0A078G6Q9UniProt:A0A078G6Q9EnsemblPlants:CDY22150ProteinID:CDY22150
ProteinID:CDY22150.1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0006855
GO:GO:0008150GO:GO:0015238GO:GO:0015297GO:GO:0016020GO:GO:0016021GO:GO:0055085
EnsemblPlantsGene:GSBRNA2T00018547001InterPro:MATE_famPFAM:PF01554PANTHER:PTHR42893PANTHER:PTHR42893:SF7TIGRFAMs:TIGR00797
TMHMM:TMhelixUniParc:UPI0002544586SEG:seg:::
Description
BnaC01g39510DProtein DETOXIFICATION [Source:UniProtKB/TrEMBL;Acc:A0A078G6Q9]
Coordinates
chrLK032128:-:207667..211117
Molecular Weight (calculated)
55660.8 Da
IEP (calculated)
10.027
GRAVY (calculated)
0.637
Length
528 amino acids
Sequence
(BLAST)
001: MTEAGDLTSV PNSVIKPFPF LVIFKDLKHV FSMDAIGREI LSMAFPAALA FAADPIASLI DTAYIGRLGA VELAALGVSI AIFNQASRIT IFPVVSVTTS
101: FVAEEDTMEK MKEDEANKAI THANTSAVQD SLEKGVASPA SNNTSQPQQT PASDTKPSSG NKAKKKGKKN IKSASTAMII GLILGLVQAI ALIFSSKVLL
201: GVMGVKPNSA VLSPAHKYLT IRSLGSPALL LSLSMQGIFR GFKDTKTPLY ATVVADVINI ILDPIFIFVL HLGVSGAAIA HVISQYFMTL ILFIRLASKV
301: NLMPPNFGEL QFGKFLKSGG LLLARTVAVT FCQTLAAAVM ARLGTTPMAA FQICLQVWLT TSLLADGLAV AGQAILACSF AEKDYNKVTA ATSRVLQMGF
401: VLGLGLSVFV GLGLYFGAGV FSKDAAVIHL IAIGIPFVAA TQPINSIAFV LDGVNFGASD FAYTAYSMVG VAAITIAAII YMAKFYGFLG IWIALTIYMG
501: LRTVTGIARI ATGTGPWKFL RGRSPSSS
Best Arabidopsis Sequence Match ( AT3G08040.1 )
(BLAST)
001: MTETGDDLAT VKKPIPFLVI FKDLRHVFSR DTTGREILGI AFPAALALAA DPIASLIDTA FVGRLGAVQL AAVGVSIAIF NQASRITIFP LVSLTTSFVA
101: EEDTMEKMKE EANKANLVHA ETILVQDSLE KGISSPTSND TNQPQQPPAP DTKSNSGNKS NKKEKRTIRT ASTAMILGLI LGLVQAIFLI FSSKLLLGVM
201: GVKPNSPMLS PAHKYLSIRA LGAPALLLSL AMQGIFRGFK DTKTPLFATV VADVINIVLD PIFIFVLRLG IIGAAIAHVI SQYFMTLILF VFLAKKVNLI
301: PPNFGDLQFG RFLKNGLLLL ARTIAVTFCQ TLAAAMAARL GTTPMAAFQI CLQVWLTSSL LNDGLAVAGQ AILACSFAEK DYNKVTAVAS RVLQMGFVLG
401: LGLSVFVGLG LYFGAGVFSK DPAVIHLMAI GIPFIAATQP INSLAFVLDG VNFGASDFAY TAYSMVGVAA ISIAAVIYMA KTNGFIGIWI ALTIYMALRA
501: ITGIARMATG TGPWRFLRGR SSSSSS
Arabidopsis Description
DTX43Protein DETOXIFICATION 43 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFB0]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.