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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • cytosol 2
  • plasma membrane 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, secretory
BaCelLo:cytosol
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400015077
PGSC0003DMT400050482

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G08040.1 PGSC0003DMT400015077 AT5G22290.1 21798944
AT3G08040.1 PGSC0003DMT400050482 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400017707 Potato cytosol, plasma membrane, vacuole 93.3 93.3
Solyc01g087150.2.1 Tomato plasma membrane 89.2 91.24
KRH27482 Soybean plasma membrane 40.22 67.71
VIT_13s0064g00930.t01 Wine grape plasma membrane 65.36 65.49
VIT_13s0064g00940.t01 Wine grape plasma membrane 66.48 65.27
PGSC0003DMT400018991 Potato cytosol, plasma membrane, vacuole 59.78 62.7
AT3G08040.1 Thale cress cytosol, plasma membrane, vacuole 61.08 62.36
CDX74016 Canola extracellular, plasma membrane, vacuole 15.64 60.87
Bra040047.1-P Field mustard cytosol, plasma membrane, vacuole 59.4 60.42
CDY22150 Canola cytosol, plasma membrane, vacuole 59.4 60.42
PGSC0003DMT400027815 Potato cytosol, plasma membrane, vacuole 58.66 60.34
Bra001283.1-P Field mustard plasma membrane 59.4 60.3
CDX74014 Canola plasma membrane 59.4 60.3
GSMUA_Achr4P06960_001 Banana plasma membrane 56.24 60.16
Bra001282.1-P Field mustard plasma membrane 57.36 60.16
CDX74015 Canola plasma membrane 57.36 60.16
CDY07959 Canola plasma membrane 59.4 60.08
GSMUA_Achr3P29780_001 Banana plasma membrane 57.91 60.04
CDY07957 Canola plasma membrane 59.03 59.92
CDY35980 Canola plasma membrane 59.78 59.89
CDY28001 Canola plasma membrane 59.03 59.81
Bra029694.1-P Field mustard plasma membrane 59.59 59.7
TraesCS1D01G304800.1 Wheat plasma membrane 54.19 58.55
KRH13953 Soybean plasma membrane 60.15 58.41
TraesCS1B01G315900.1 Wheat plasma membrane 54.0 58.35
TraesCS1A01G305200.1 Wheat plasma membrane 54.0 58.35
KRH27481 Soybean plasma membrane 56.61 58.13
KRH37984 Soybean cytosol, plasma membrane, vacuole 59.78 57.73
CDY27977 Canola endoplasmic reticulum, extracellular, plasma membrane 21.97 57.56
HORVU1Hr1G068960.15 Barley plasma membrane 54.38 56.7
EES14441 Sorghum plasma membrane 54.75 56.0
KRH20827 Soybean cytosol, plasma membrane, vacuole 43.02 53.97
Zm00001d035115_P004 Maize plasma membrane 51.21 44.72
PGSC0003DMT400028660 Potato endoplasmic reticulum, plasma membrane 29.42 39.8
CDY27978 Canola plasma membrane 32.22 37.77
Zm00001d025649_P001 Maize plasma membrane 13.22 37.77
Zm00001d042411_P001 Maize plastid 17.32 35.91
Zm00001d007814_P001 Maize mitochondrion 18.62 34.84
PGSC0003DMT400022359 Potato plastid 34.45 30.94
PGSC0003DMT400047961 Potato plastid 35.38 30.84
PGSC0003DMT400008778 Potato plastid 19.93 19.67
PGSC0003DMT400008050 Potato mitochondrion, plasma membrane, plastid, vacuole 17.5 19.67
PGSC0003DMT400008058 Potato plastid 19.74 19.03
Protein Annotations
MapMan:24.2.4.1.3MapMan:25.4.6.1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810
GO:GO:0006855GO:GO:0008150GO:GO:0015238GO:GO:0015297GO:GO:0016020GO:GO:0016021
GO:GO:0055085UniProt:M1A9B7InterPro:MATE_famPFAM:PF01554EnsemblPlantsGene:PGSC0003DMG400006865PGSC:PGSC0003DMG400006865
EnsemblPlants:PGSC0003DMT400017700PANTHER:PTHR42893PANTHER:PTHR42893:SF11TIGRFAMs:TIGR00797TMHMM:TMhelixUniParc:UPI000295D019
SEG:seg:::::
Description
DNA-damage-inducible protein f [Source:PGSC_GENE;Acc:PGSC0003DMG400006865]
Coordinates
chr1:-:65810578..65815567
Molecular Weight (calculated)
58211.1 Da
IEP (calculated)
9.550
GRAVY (calculated)
0.543
Length
537 amino acids
Sequence
(BLAST)
001: MAEVGNVACT KRRWNIPIFV FFEDIRNVFK FDDLGMEILR IAFPAALALA ADPIASLIDT AFIGHLGANE IAAVGVSIAI FNQASKVTIF PLVNITTSFV
101: AEEETVRRIS EKEAIGDLEK GKEEKNDTKV ELVLTDDTDN DKKETKEIAL APESKTTKCE SLDNKSKGKL KRVKRHIPSA STAILMGCIL GLLQTIFLIF
201: LAKPILSLMG VKSDSPMLSP AKKYLTLRAI GAPAVLLSLA MQGVFRGFKD TRTPLYAIVV GDLTNIILDP IFIFVLNWGV SGAAIAHVLS QYLISIILLC
301: KLMTEVNLLP PSAKDLQFSK FLKNGFWLLA RVIAVTFCVT LAASLAARLG TTQMAAFQVC LQIWLTSSLL ADGLAVAGQA ILASSFAEKD FQKAKAAGVR
401: VLQMGLVLGF GLAIVVAIGL YFGSGVFSKD KNVIRFIIIA IPFVAGTQPI NSVAFVLDGV NFGANDFAYS AYSMVLVGAL TITSEFFLYK TNGYTGIWIA
501: LTIFMVLRTF AGLWRMGTGT GPWRFLRIPS MSVEAKS
Best Arabidopsis Sequence Match ( AT3G08040.1 )
(BLAST)
001: MTETGDDLAT VKKPIPFLVI FKDLRHVFSR DTTGREILGI AFPAALALAA DPIASLIDTA FVGRLGAVQL AAVGVSIAIF NQASRITIFP LVSLTTSFVA
101: EEDTMEKMKE EANKANLVHA ETILVQDSLE KGISSPTSND TNQPQQPPAP DTKSNSGNKS NKKEKRTIRT ASTAMILGLI LGLVQAIFLI FSSKLLLGVM
201: GVKPNSPMLS PAHKYLSIRA LGAPALLLSL AMQGIFRGFK DTKTPLFATV VADVINIVLD PIFIFVLRLG IIGAAIAHVI SQYFMTLILF VFLAKKVNLI
301: PPNFGDLQFG RFLKNGLLLL ARTIAVTFCQ TLAAAMAARL GTTPMAAFQI CLQVWLTSSL LNDGLAVAGQ AILACSFAEK DYNKVTAVAS RVLQMGFVLG
401: LGLSVFVGLG LYFGAGVFSK DPAVIHLMAI GIPFIAATQP INSLAFVLDG VNFGASDFAY TAYSMVGVAA ISIAAVIYMA KTNGFIGIWI ALTIYMALRA
501: ITGIARMATG TGPWRFLRGR SSSSSS
Arabidopsis Description
DTX43Protein DETOXIFICATION 43 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFB0]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.