Factsheet for PGSC0003DMT400008778

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
vacuole 2
mitochondrion 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008058	Potato	plastid	70.59	68.94
CDY65815	Canola	plasma membrane	55.88	68.93
PGSC0003DMT400008050	Potato	mitochondrion, plasma membrane, plastid, vacuole	57.9	65.9
GSMUA_Achr1P16310_001	Banana	plasma membrane	51.29	65.8
VIT_03s0038g00410.t01	Wine grape	cytosol, peroxisome, plasma membrane	60.85	65.03
OQU84246	Sorghum	plasma membrane	50.55	64.86
CDX83192	Canola	plastid	58.46	59.33
CDX82020	Canola	plastid	59.93	58.74
Bra031182.1-P	Field mustard	plastid	59.38	58.51
HORVU6Hr1G012070.9	Barley	peroxisome, plastid	53.86	58.02
VIT_03s0038g00430.t01	Wine grape	plastid	60.11	57.67
KRH29368	Soybean	plastid	57.54	57.33
KRH29367	Soybean	plastid	57.35	56.93
AT2G21340.1	Thale cress	plastid	58.09	56.53
Os02t0122200-00	Rice	plastid, vacuole	48.71	55.56
TraesCS6B01G090100.1	Wheat	plasma membrane	52.02	55.17
Bra000583.1-P	Field mustard	plastid	52.21	55.15
TraesCSU01G117300.1	Wheat	plastid	53.31	54.31
TraesCS6A01G066900.3	Wheat	plasma membrane, plastid, vacuole	53.31	54.31
Zm00001d015060_P001	Maize	plastid	54.04	53.95
CDY42600	Canola	mitochondrion	52.21	52.99
CDY41956	Canola	mitochondrion	52.21	52.99
AT4G39030.1	Thale cress	mitochondrion	52.76	52.85
Bra011880.1-P	Field mustard	mitochondrion	52.21	52.79
KRH24389	Soybean	extracellular	10.29	47.06
PGSC0003DMT400028660	Potato	endoplasmic reticulum, plasma membrane	16.36	22.42
PGSC0003DMT400027815	Potato	cytosol, plasma membrane, vacuole	20.4	21.26
PGSC0003DMT400018991	Potato	cytosol, plasma membrane, vacuole	19.49	20.7
PGSC0003DMT400017707	Potato	cytosol, plasma membrane, vacuole	20.22	20.48
PGSC0003DMT400017700	Potato	plasma membrane	19.67	19.93
PGSC0003DMT400047961	Potato	plastid	22.24	19.64
PGSC0003DMT400022359	Potato	plastid	19.3	17.56

Protein Annotations

EntrezGene:102606365	MapMan:11.8.4.1	MapMan:24.2.4.1.2	ncoils:Coil	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0006855	GO:GO:0008150	GO:GO:0015238	GO:GO:0015297
GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	UniProt:M0ZV31	InterPro:MATE_fam	PFAM:PF01554
EnsemblPlantsGene:PGSC0003DMG400003411	PGSC:PGSC0003DMG400003411	EnsemblPlants:PGSC0003DMT400008778	PANTHER:PTHR42893	PANTHER:PTHR42893:SF9	TIGRFAMs:TIGR00797
TMHMM:TMhelix	UniParc:UPI00029590EE	RefSeq:XP_006360630.1	SEG:seg	:	:

Description

DNA-damage-inducible protein f [Source:PGSC_GENE;Acc:PGSC0003DMG400003411]

Coordinates

chr10:-:45343781..45351344

Molecular Weight (calculated)

59317.8 Da

IEP (calculated)

8.042

GRAVY (calculated)

0.511

Length

544 amino acids

Sequence
(BLAST)

001: MSMCLQAINL NTFTHQSRTR IPVHNRTLVN VNSHLRISPI WNIRKGIITA CSAPSQEILQ QKLSDEDENS SSDAENSDSV ENEQQVVVEF SANESIWNQT
101: VEIIKFSGPA VGLWLSGPLM SLIDTAVVGQ GSSIELAALG PGTVFCDNTS YIFMFLSIAT SNLVATSLAR QDKDQVQHQI SILIFLGLVF GVLMFFCTRL
201: FGIRALTSFT GAKNIEIINS ANTYIQIRGL AWPALLVGWV AQSASLGMKD SWGPLKALAV ATVINGIGDI VLCRVFSYGI AGAAWATMVS QVVAAYMMIE
301: ALNSKGYKGF AISIPSTDEL LQIFTIAGPV FLTMMSKVAF YSLLVYFATS MGTQTIAAHQ VMVQLFMICA VWGEPLSQTA QSFMPELLYG ANRNLSKARM
401: LLKSLVIVGA SSGTILASVA ASIPWLFPKV FSSDPQVIRE MQKILLPYFI ALFVTPSILS LEGTLLAGRD LKFISLSMSS IFVFSSILLM LLSSKGLGLS
501: GCWFALVVFQ WARFFMALRR LTLSNGILYS EEATQNELQK LKAA

Best Arabidopsis Sequence Match ( AT2G21340.1 )
(BLAST)

001: MQIQCKTLTF TVSSIPCNPK LPFPSSLTLR SWNPSFPSFR SSAVSGPKSS LKLNRFLRNC ASTNQELVVD GETGNGSISE LQGDAANGSI SPVEVEAEVE
101: EVKVDDLATQ SIWGQMKEIV MFTGPAAGLW LCGPLMSLID TAVIGQGSSL ELAALGPATV ICDYLCYTFM FLSVATSNLV ATSLARQDKD EVQHQISILL
201: FIGLACGVTM MVLTRLFGSW ALTAFTGVKN ADIVPAANKY VQIRGLAWPA VLIGWVAQSA SLGMKDSWGP LKALAVASAI NGVGDVVLCT FLGYGIAGAA
301: WATMVSQVVA AYMMMDALNK KGYSAFSFCV PSPSELLTIF GLAAPVFITM MSKVLFYTLL VYFATSMGTN IIAAHQVMLQ IYTMSTVWGE PLSQTAQSFM
401: PELLFGINRN LPKARVLLKS LVIIGATLGI VVGTIGTAVP WLFPGIFTRD KVVTSEMHKV IIPYFLALSI TPSTHSLEGT LLAGRDLRYI SLSMTGCLAV
501: AGLLLMLLSN GGFGLRGCWY ALVGFQWARF SLSLFRLLSR DGVLYSEDTS RYAEKVKAA

Arabidopsis Description

DTX46Protein DETOXIFICATION 46, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W4G3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.