Factsheet for PGSC0003DMT400022359

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g061760.2.1	Tomato	plastid	85.79	93.1
HORVU1Hr1G085680.1	Barley	plasma membrane	29.43	59.66
TraesCS4B01G322300.1	Wheat	plasma membrane	32.11	58.9
TraesCS6B01G470700.2	Wheat	plasma membrane	44.48	58.59
HORVU7Hr1G109470.1	Barley	golgi, plasma membrane, vacuole	14.21	57.05
GSMUA_AchrUn_...	Banana	golgi, plasma membrane, vacuole	25.75	56.41
GSMUA_AchrUn_...	Banana	plasma membrane	20.23	54.75
KXG32398	Sorghum	plastid	46.15	50.83
TraesCS6A01G418800.1	Wheat	plastid	47.32	50.63
TraesCS7D01G031100.1	Wheat	plastid	46.66	48.78
TraesCS6D01G407900.1	Wheat	plastid	47.49	47.73
PGSC0003DMT400028660	Potato	endoplasmic reticulum, plasma membrane	31.61	47.61
Zm00001d040665_P001	Maize	plastid	44.31	47.49
Os09t0548300-01	Rice	plastid	45.32	46.97
PGSC0003DMT400047961	Potato	plastid	48.16	46.75
HORVU6Hr1G095270.9	Barley	golgi, plasma membrane, plastid	46.82	45.98
KXG36122	Sorghum	mitochondrion, plasma membrane	44.82	45.97
Zm00001d021446_P002	Maize	plastid	44.15	45.6
PGSC0003DMT400018991	Potato	cytosol, plasma membrane, vacuole	31.94	37.3
HORVU6Hr1G041060.5	Barley	extracellular	7.69	36.22
PGSC0003DMT400027815	Potato	cytosol, plasma membrane, vacuole	31.44	36.02
PGSC0003DMT400017700	Potato	plasma membrane	30.94	34.45
PGSC0003DMT400017707	Potato	cytosol, plasma membrane, vacuole	30.77	34.26
PGSC0003DMT400008050	Potato	mitochondrion, plasma membrane, plastid, vacuole	15.89	19.87
PGSC0003DMT400008778	Potato	plastid	17.56	19.3
PGSC0003DMT400008058	Potato	plastid	17.89	19.21

Protein Annotations

EntrezGene:102590197	MapMan:24.2.4.1.3	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0006855	GO:GO:0008150	GO:GO:0015238	GO:GO:0015297	GO:GO:0016020	GO:GO:0016021
GO:GO:0055085	UniProt:M1AGK8	InterPro:MATE_fam	PFAM:PF01554	EnsemblPlantsGene:PGSC0003DMG400008676	PGSC:PGSC0003DMG400008676
EnsemblPlants:PGSC0003DMT400022359	PANTHER:PTHR42893	PANTHER:PTHR42893:SF8	TIGRFAMs:TIGR00797	TMHMM:TMhelix	UniParc:UPI000296A122
SEG:seg	:	:	:	:	:

Description

DNA-damage-inducible protein f [Source:PGSC_GENE;Acc:PGSC0003DMG400008676]

Coordinates

chr2:-:19528063..19534511

Molecular Weight (calculated)

64257.8 Da

IEP (calculated)

9.302

GRAVY (calculated)

0.436

Length

598 amino acids

Sequence
(BLAST)

001: MAVLKLPVAV TCGRTSGTEC SARRTLNKPF LIKTSTWNNY LGSRSTKRSK LNNVIRNCGL SSDDRAVDYN LDSSNLEEKF GSTRDRLSNE GAIALSGTSI
101: DQLPTQDVQT ELIVLSLPAI AGQAIEPLAQ LMETAYIGRM GAMELASAGI SVSIFNIISK VFNIPLLSVA TSFVAEDISK YADEDSATAE RKALPSVSTA
201: LVLSAGIGLI EAAAMYLGSG PFLSIMGLST DSTMRIPAEH FLKLRALGAP AVVLYLAVQG IFRGFKDTRT PTLTLTGRKC VDVAGLGNLS AVLFFPVFMY
301: TFQLGITGAA ISTVASQYIV AILMLWKLNE KTVLLQPNIR NLHFGGYLKS GGFLLGRTLA AVLTVTLSTS MAARLGAIPM AAHQICLQVW LSASLLADAQ
401: AASGQALIAS SFARKDYGRV KLITHVALKT GLATGILLAI ILGLSFPSFA KCFTNDSQVL DIVRSGLLFV SASQPLNALA YIFDGLHYGV SDFPYAAISM
501: MIVGALASIF LIYAPPIIGL PGVWSGLTIF MGLRSVAGFM RLHHHRTALR LEATGISNEV KAFREMELLS IDRREQIAID CFAYLFYYGR LGDIKLHY

Best Arabidopsis Sequence Match ( AT4G38380.1 )
(BLAST)

001: MESSRVVVGG GLPLANRRNS SFAKPKIQQG TFLPLSRINN VSAPQKCSLH TNPNPMFPFV TRRKSQTNPD CGVVKLGEED DSCSSLDKLP EVNGVHTGVA
101: RPVDIKRELV MLSLPAIAGQ AIDPLTLLME TAYIGRLGSV ELGSAGVSMA IFNTISKLFN IPLLSVATSF VAEDIAKIAA QDLASEDSQS DIPSQGLPER
201: KQLSSVSTAL VLAIGIGIFE ALALSLASGP FLRLMGIQSM SEMFIPARQF LVLRALGAPA YVVSLALQGI FRGFKDTKTP VYCLGIGNFL AVFLFPLFIY
301: KFRMGVAGAA ISSVISQYTV AILMLILLNK RVILLPPKIG SLKFGDYLKS GGFVLGRTLS VLVTMTVATS MAARQGVFAM AAHQICMQVW LAVSLLTDAL
401: ASSGQALIAS SASKRDFEGV KEVTTFVLKI GVVTGIALAI VLGMSFSSIA GLFSKDPEVL RIVRKGVLFV AATQPITALA FIFDGLHYGM SDFPYAACSM
501: MVVGGISSAF MLYAPAGLGL SGVWVGLSMF MGLRMVAGFS RLMWRKGPWW FMHTSDKRLA

Arabidopsis Description

DTX45Protein DETOXIFICATION 45, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SVE7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.