Factsheet for PGSC0003DMT400008050

Subcellular Localization

min:

: max

Winner_takes_all: plastid, vacuole, plasma membrane, mitochondrion

Predictor Summary:

plastid 2
vacuole 2
mitochondrion 3
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008058	Potato	plastid	83.47	71.63
CDY65815	Canola	plasma membrane	55.02	59.64
PGSC0003DMT400008778	Potato	plastid	65.9	57.9
GSMUA_Achr1P16310_001	Banana	plasma membrane	48.54	54.72
VIT_03s0038g00410.t01	Wine grape	cytosol, peroxisome, plasma membrane	58.16	54.62
OQU84246	Sorghum	plasma membrane	46.65	52.59
CDX82020	Canola	plastid	59.83	51.53
CDX83192	Canola	plastid	57.74	51.49
Bra031182.1-P	Field mustard	plastid	59.0	51.09
Bra000583.1-P	Field mustard	plastid	54.6	50.68
KRH29368	Soybean	plastid	56.28	49.27
Os02t0122200-00	Rice	plastid, vacuole	49.16	49.27
KRH29367	Soybean	plastid	56.07	48.91
AT2G21340.1	Thale cress	plastid	56.9	48.66
VIT_03s0038g00430.t01	Wine grape	plastid	56.9	47.97
HORVU6Hr1G012070.9	Barley	peroxisome, plastid	50.42	47.72
CDY42600	Canola	mitochondrion	52.09	46.46
CDY41956	Canola	mitochondrion	52.09	46.46
Bra011880.1-P	Field mustard	mitochondrion	52.09	46.28
TraesCS6A01G066900.3	Wheat	plasma membrane, plastid, vacuole	51.05	45.69
TraesCSU01G117300.1	Wheat	plastid	50.84	45.51
AT4G39030.1	Thale cress	mitochondrion	51.67	45.49
TraesCS6B01G090100.1	Wheat	plasma membrane	48.74	45.42
Zm00001d015060_P001	Maize	plastid	51.26	44.95
KRH24389	Soybean	extracellular	6.69	26.89
PGSC0003DMT400028660	Potato	endoplasmic reticulum, plasma membrane	16.74	20.15
PGSC0003DMT400018991	Potato	cytosol, plasma membrane, vacuole	19.67	18.36
PGSC0003DMT400017707	Potato	cytosol, plasma membrane, vacuole	19.67	17.5
PGSC0003DMT400017700	Potato	plasma membrane	19.67	17.5
PGSC0003DMT400027815	Potato	cytosol, plasma membrane, vacuole	18.83	17.24
PGSC0003DMT400047961	Potato	plastid	21.76	16.88
PGSC0003DMT400022359	Potato	plastid	19.87	15.89

Protein Annotations

MapMan:11.8.4.1	MapMan:24.2.4.1.2	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0006855	GO:GO:0008150	GO:GO:0015238	GO:GO:0015297	GO:GO:0016020	GO:GO:0016021
GO:GO:0055085	UniProt:M0ZTZ4	InterPro:MATE_fam	PFAM:PF01554	EnsemblPlantsGene:PGSC0003DMG401003112	PGSC:PGSC0003DMG401003112
EnsemblPlants:PGSC0003DMT400008050	PANTHER:PTHR42893	PANTHER:PTHR42893:SF9	TMHMM:TMhelix	UniParc:UPI000294C9F3	SEG:seg

Description

DNA-damage-inducible protein f [Source:PGSC_GENE;Acc:PGSC0003DMG401003112]

Coordinates

chr1:-:86580203..86586442

Molecular Weight (calculated)

51626.9 Da

IEP (calculated)

7.708

GRAVY (calculated)

0.569

Length

478 amino acids

Sequence
(BLAST)

001: MNLNFSSTRL QNCQVTPLNR ICKHRKQIIT ACLKQKIPVK LENLNPDSCI SDEQQVKAVT LGEEIPVVNS NGKEEFSGNE SIWDQMVEIV KFSGPAVGLW
101: LCGPLMSLID TAVVGQGSSI ELAALGPGTV FCDNTSYVFM FLSIATSNLV ATALAKQDKD GVQHQISILL FIGLACGVVM LIFTRLFGTW GITAFTGAHN
201: TEITNAANTY VQIRGLAWPA MLVGWVAQSA SLGIKDSRGP LKALAVATAI NGIGDIVLCR FFNYGIAGAA WATMVSQVVA AYMMIAALNK NGYNGFALSV
301: PSLDELLQIF MLAAPLFLTM MSKVAFYSLL VYYATSMGTH TAAAHQMNTV NQARMLLKSL LIIGASNGLI MGTAGVLMSL FFSKIFSTDP LVIQEMHNVL
401: LPLFLALLVA PSVLCFEGTL LAGRDLNFLS ISMTSIFGLA SLLVMTRFLV ALRRLTMVDG MLYLEGSVHD EFQKLKVS

Best Arabidopsis Sequence Match ( AT2G21340.1 )
(BLAST)

001: MQIQCKTLTF TVSSIPCNPK LPFPSSLTLR SWNPSFPSFR SSAVSGPKSS LKLNRFLRNC ASTNQELVVD GETGNGSISE LQGDAANGSI SPVEVEAEVE
101: EVKVDDLATQ SIWGQMKEIV MFTGPAAGLW LCGPLMSLID TAVIGQGSSL ELAALGPATV ICDYLCYTFM FLSVATSNLV ATSLARQDKD EVQHQISILL
201: FIGLACGVTM MVLTRLFGSW ALTAFTGVKN ADIVPAANKY VQIRGLAWPA VLIGWVAQSA SLGMKDSWGP LKALAVASAI NGVGDVVLCT FLGYGIAGAA
301: WATMVSQVVA AYMMMDALNK KGYSAFSFCV PSPSELLTIF GLAAPVFITM MSKVLFYTLL VYFATSMGTN IIAAHQVMLQ IYTMSTVWGE PLSQTAQSFM
401: PELLFGINRN LPKARVLLKS LVIIGATLGI VVGTIGTAVP WLFPGIFTRD KVVTSEMHKV IIPYFLALSI TPSTHSLEGT LLAGRDLRYI SLSMTGCLAV
501: AGLLLMLLSN GGFGLRGCWY ALVGFQWARF SLSLFRLLSR DGVLYSEDTS RYAEKVKAA

Arabidopsis Description

DTX46Protein DETOXIFICATION 46, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W4G3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.