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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, vacuole, cytosol

Predictor Summary:
  • cytosol 2
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 2
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plasma membrane, vacuole
Any Predictor:cytosol, secretory
BaCelLo:cytosol
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400015077
PGSC0003DMT400050482

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G08040.1 PGSC0003DMT400015077 AT5G22290.1 21798944
AT3G08040.1 PGSC0003DMT400050482 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400017700 Potato plasma membrane 93.3 93.3
Solyc01g087150.2.1 Tomato plasma membrane 90.5 92.57
VIT_13s0064g00930.t01 Wine grape plasma membrane 65.74 65.86
KRH27482 Soybean plasma membrane 39.11 65.83
VIT_13s0064g00940.t01 Wine grape plasma membrane 66.29 65.08
PGSC0003DMT400018991 Potato cytosol, plasma membrane, vacuole 61.08 64.06
AT3G08040.1 Thale cress cytosol, plasma membrane, vacuole 61.27 62.55
PGSC0003DMT400027815 Potato cytosol, plasma membrane, vacuole 60.34 62.07
GSMUA_Achr3P29780_001 Banana plasma membrane 59.03 61.2
GSMUA_Achr4P06960_001 Banana plasma membrane 56.98 60.96
Bra040047.1-P Field mustard cytosol, plasma membrane, vacuole 58.85 59.85
CDY22150 Canola cytosol, plasma membrane, vacuole 58.85 59.85
CDY28001 Canola plasma membrane 59.03 59.81
CDY35980 Canola plasma membrane 59.59 59.7
CDX74014 Canola plasma membrane 58.66 59.55
Bra001283.1-P Field mustard plasma membrane 58.66 59.55
Bra029694.1-P Field mustard plasma membrane 59.4 59.51
CDX74016 Canola extracellular, plasma membrane, vacuole 15.27 59.42
CDX74015 Canola plasma membrane 56.61 59.38
Bra001282.1-P Field mustard plasma membrane 56.61 59.38
CDY07959 Canola plasma membrane 58.66 59.32
CDY07957 Canola plasma membrane 58.29 59.17
TraesCS1D01G304800.1 Wheat plasma membrane 54.75 59.15
TraesCS1B01G315900.1 Wheat plasma membrane 54.56 58.95
TraesCS1A01G305200.1 Wheat plasma membrane 54.56 58.95
KRH13953 Soybean plasma membrane 59.78 58.05
KRH37984 Soybean cytosol, plasma membrane, vacuole 59.4 57.37
EES14441 Sorghum plasma membrane 56.05 57.33
KRH27481 Soybean plasma membrane 55.68 57.17
CDY27977 Canola endoplasmic reticulum, extracellular, plasma membrane 21.79 57.07
HORVU1Hr1G068960.15 Barley plasma membrane 54.38 56.7
KRH20827 Soybean cytosol, plasma membrane, vacuole 42.83 53.74
Zm00001d035115_P004 Maize plasma membrane 52.51 45.85
PGSC0003DMT400028660 Potato endoplasmic reticulum, plasma membrane 29.98 40.55
CDY27978 Canola plasma membrane 32.22 37.77
Zm00001d025649_P001 Maize plasma membrane 13.22 37.77
Zm00001d007814_P001 Maize mitochondrion 18.62 34.84
Zm00001d042411_P001 Maize plastid 16.76 34.75
PGSC0003DMT400047961 Potato plastid 35.75 31.17
PGSC0003DMT400022359 Potato plastid 34.26 30.77
PGSC0003DMT400008778 Potato plastid 20.48 20.22
PGSC0003DMT400008050 Potato mitochondrion, plasma membrane, plastid, vacuole 17.5 19.67
PGSC0003DMT400008058 Potato plastid 20.11 19.39
Protein Annotations
EntrezGene:102592318MapMan:24.2.4.1.1MapMan:24.2.4.1.3MapMan:25.4.6.1GO:GO:0003674GO:GO:0005215
GO:GO:0005575GO:GO:0006810GO:GO:0006855GO:GO:0008150GO:GO:0015238GO:GO:0015297
GO:GO:0016020GO:GO:0016021GO:GO:0055085UniProt:M1A9B8InterPro:MATE_famPFAM:PF01554
EnsemblPlantsGene:PGSC0003DMG400006866PGSC:PGSC0003DMG400006866EnsemblPlants:PGSC0003DMT400017707PANTHER:PTHR42893PANTHER:PTHR42893:SF11TIGRFAMs:TIGR00797
TMHMM:TMhelixUniParc:UPI0002967E6ERefSeq:XP_006345453.1SEG:seg::
Description
DNA-damage-inducible protein f [Source:PGSC_GENE;Acc:PGSC0003DMG400006866]
Coordinates
chr1:-:65839569..65847839
Molecular Weight (calculated)
58198.1 Da
IEP (calculated)
9.460
GRAVY (calculated)
0.577
Length
537 amino acids
Sequence
(BLAST)
001: MAEVGNVACT ERRWNIPIFV FFEDIRNVFK FDDLGMEILR IAFPAALALA ADPIASLIDT AFIGHLGAVE IAAVGVSIAI FNQASKVTIF PLVNITTSFV
101: AEEDTVRRIS EKEAKADLEK GKMEKNDSTK QLILTGDNYN DKTETKETVL APEFKTTKCE SLDNKSEGKL KHVKRHIPSA STAILMGCIL GILQTIFLIF
201: LAKPILSLMG VKSDSPMLSP AKKYLTLRAI GAPAVLLSLA MQGVFRGFKD TRTPLFATVA GDLTNIILDP IFIFVFRWGV SGAAIAHVLS QYLISIILLF
301: KLMTEVDLLP PSAKDLQFSK FLKNGFWLLA RVIAVTFCVT LAASLAARLG TTQMAAFQVC LQIWLTSSLL ADGLAVAGQA ILASSFAEKD FQKAKAAGVR
401: VLQMGLVLGF GLAIVVAIGL YFGSGVFSKD KNVIRFIIIA IPFVAGTQPI NSVAFVLDGV NFGANDFAYS AYSMVLVGAL TITCEFVLSK TNGYIGIWIA
501: LAIFMVLRTF AGLWRMGTGT GPWRFLRIPP MSAEVKS
Best Arabidopsis Sequence Match ( AT3G08040.1 )
(BLAST)
001: MTETGDDLAT VKKPIPFLVI FKDLRHVFSR DTTGREILGI AFPAALALAA DPIASLIDTA FVGRLGAVQL AAVGVSIAIF NQASRITIFP LVSLTTSFVA
101: EEDTMEKMKE EANKANLVHA ETILVQDSLE KGISSPTSND TNQPQQPPAP DTKSNSGNKS NKKEKRTIRT ASTAMILGLI LGLVQAIFLI FSSKLLLGVM
201: GVKPNSPMLS PAHKYLSIRA LGAPALLLSL AMQGIFRGFK DTKTPLFATV VADVINIVLD PIFIFVLRLG IIGAAIAHVI SQYFMTLILF VFLAKKVNLI
301: PPNFGDLQFG RFLKNGLLLL ARTIAVTFCQ TLAAAMAARL GTTPMAAFQI CLQVWLTSSL LNDGLAVAGQ AILACSFAEK DYNKVTAVAS RVLQMGFVLG
401: LGLSVFVGLG LYFGAGVFSK DPAVIHLMAI GIPFIAATQP INSLAFVLDG VNFGASDFAY TAYSMVGVAA ISIAAVIYMA KTNGFIGIWI ALTIYMALRA
501: ITGIARMATG TGPWRFLRGR SSSSSS
Arabidopsis Description
DTX43Protein DETOXIFICATION 43 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFB0]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.