CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole, cytosol

Predictor Summary:

cytosol 2
plasma membrane 2
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22653
KRH26664

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G08040.1	KRH22653	AT5G22290.1	21798944
AT3G08040.1	KRH26664	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13953	Soybean	plasma membrane	69.16	53.53
KRH37984	Soybean	cytosol, plasma membrane, vacuole	68.46	52.7
KRH27481	Soybean	plasma membrane	62.85	51.43
KRH27482	Soybean	plasma membrane	38.32	51.41
KRH71965	Soybean	plasma membrane	34.11	50.17
KRH27483	Soybean	cytosol	25.47	50.0
VIT_13s0064g00930.t01	Wine grape	plasma membrane	58.41	46.64
VIT_13s0064g00940.t01	Wine grape	plasma membrane	57.94	45.34
Bra001282.1-P	Field mustard	plasma membrane	52.1	43.55
CDX74015	Canola	plasma membrane	52.1	43.55
AT3G08040.1	Thale cress	cytosol, plasma membrane, vacuole	53.04	43.16
PGSC0003DMT400017700	Potato	plasma membrane	53.97	43.02
Solyc01g087150.2.1	Tomato	plasma membrane	52.57	42.86
PGSC0003DMT400017707	Potato	cytosol, plasma membrane, vacuole	53.74	42.83
CDY07957	Canola	plasma membrane	52.34	42.34
CDY07959	Canola	plasma membrane	52.34	42.18
CDX74014	Canola	plasma membrane	52.1	42.16
Bra001283.1-P	Field mustard	plasma membrane	52.1	42.16
CDY28001	Canola	plasma membrane	51.64	41.7
GSMUA_Achr4P06960_001	Banana	plasma membrane	48.83	41.63
Bra040047.1-P	Field mustard	cytosol, plasma membrane, vacuole	51.17	41.48
CDY22150	Canola	cytosol, plasma membrane, vacuole	51.17	41.48
GSMUA_Achr3P29780_001	Banana	plasma membrane	50.0	41.31
Bra029694.1-P	Field mustard	plasma membrane	50.93	40.67
CDY35980	Canola	plasma membrane	50.93	40.67
TraesCS1D01G304800.1	Wheat	plasma membrane	46.96	40.44
KRH10205	Soybean	plasma membrane	52.34	40.43
TraesCS1A01G305200.1	Wheat	plasma membrane	46.73	40.24
TraesCS1B01G315900.1	Wheat	plasma membrane	46.5	40.04
KRH23130	Soybean	plasma membrane	51.87	40.0
EES14441	Sorghum	plasma membrane	48.6	39.62
KRH33105	Soybean	plasma membrane	45.33	38.72
HORVU1Hr1G068960.15	Barley	plasma membrane	46.26	38.45
CDY27978	Canola	plasma membrane	39.25	36.68
Zm00001d035115_P004	Maize	plasma membrane	48.36	33.66
KRH49460	Soybean	plastid	38.08	30.24
Zm00001d042411_P001	Maize	plastid	16.36	27.03
KRH74091	Soybean	plasma membrane	31.78	25.86
KRH14024	Soybean	plasma membrane	32.24	24.69
KRH00327	Soybean	plastid	32.94	23.78
Zm00001d025649_P001	Maize	plasma membrane	10.28	23.4
Zm00001d007814_P001	Maize	mitochondrion	14.95	22.3
KRH71966	Soybean	extracellular, golgi	10.75	22.12
CDY27977	Canola	endoplasmic reticulum, extracellular, plasma membrane	9.11	19.02
KRH25702	Soybean	cytosol, peroxisome, plasma membrane, plastid	7.48	15.38
KRH29368	Soybean	plastid	17.76	13.92
KRH29367	Soybean	plastid	16.82	13.14
KRG96963	Soybean	plasma membrane	7.24	11.36
CDX74016	Canola	extracellular, plasma membrane, vacuole	0.23	0.72
KRH29719	Soybean	extracellular	0.0	0.0
KRH24389	Soybean	extracellular	0.0	0.0

Protein Annotations

MapMan:24.2.4.1.3	EMBL:ACUP02008313	EnsemblPlantsGene:GLYMA_13G203000	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0006855	GO:GO:0008150	GO:GO:0015238	GO:GO:0015297	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	UniProt:K7M0U4	EnsemblPlants:KRH20827	ProteinID:KRH20827	ProteinID:KRH20827.1
InterPro:MATE_fam	PFAM:PF01554	PANTHER:PTHR42893	PANTHER:PTHR42893:SF7	TIGRFAMs:TIGR00797	TMHMM:TMhelix
UniParc:UPI000295E7A5	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:31683629..31689851

Molecular Weight (calculated)

46531.3 Da

IEP (calculated)

9.907

GRAVY (calculated)

0.197

Length

428 amino acids

Sequence
(BLAST)

001: MDENRSSNEP NKWKMPLFVF FKDARNVFKL DALSREILGI ALPSALAVSA DPIASLIDTA FIGRLGPVEL AAAGVSISLL NQASRITIFP LVNITTSFVA
101: EEDTIQKLNT KAAENGNSKA KFGETIVPED HMLQDMEKGT PKVMNTDAPT EFREDKDESQ EYNATGNNDT NIGDGANTIC KFSSVTSSKK SKDKVGKKKR
201: LIASASTALL FGTILGLIQA AVLIFATKPL LGVMGVKRDS PMLKPAESYL RLRSFGAPAV LLSLAMQGIF RGFKDTTTPL YVIVSGYALN VILDPIFIFT
301: LKLGIKGAAI AHVLSQYMMA FTLLLILMKK VHLLPPRIKD LQIFRFLKNG GLLMLKVIAV TFCVTLATSL AARLGSIPMA AFQTCLQVWM TSSLLADGLA
401: VAVQAILACS FTEKDYKKQQ QQQQGHCK

Best Arabidopsis Sequence Match ( AT1G51340.2 )
(BLAST)

001: MMSEDGYNTD FPRNPLYIFF SDFRSVLKFD ELGLEIARIA LPAALALTAD PIASLVDTAF IGQIGPVELA AVGVSIALFN QVSRIAIFPL VSITTSFVAE
101: EDACSSQQDT VRDHKECIEI GINNPTEETI ELIPEKHKDS LSDEFKTSSS IFSISKPPAK KRNIPSASSA LIIGGVLGLF QAVFLISAAK PLLSFMGVKH
201: DSPMMRPSQR YLSLRSLGAP AVLLSLAAQG VFRGFKDTTT PLFATVIGDV TNIILDPIFI FVFRLGVTGA ATAHVISQYL MCGILLWKLM GQVDIFNMST
301: KHLQFCRFMK NGFLLLMRVI AVTFCVTLSA SLAAREGSTS MAAFQVCLQV WLATSLLADG YAVAGQAILA SAFAKKDYKR AAATASRVLQ LGLVLGFVLA
401: VILGAGLHFG ARVFTKDDKV LHLISIGLPF VAGTQPINAL AFVFDGVNFG ASDFGYAAAS LVMVAIVSIL CLLFLSSTHG FIGLWFGLTI YMSLRAAVGF
501: WRIGTGTGPW SFLRS

Arabidopsis Description

DTX42Protein DETOXIFICATION [Source:UniProtKB/TrEMBL;Acc:A0A178W9H8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.