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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 4
  • golgi 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, plasma membrane
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70995
CDX88803
CDX92368
CDY09128
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G08040.1 CDX70995 AT5G22290.1 21798944
AT3G08040.1 CDX88803 AT5G22290.1 21798944
AT3G08040.1 CDX92368 AT5G22290.1 21798944
AT3G08040.1 CDY09128 AT5G22290.1 21798944
AT3G08040.1 CDY35676 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra029694.1-P Field mustard plasma membrane 99.81 99.81
CDY28001 Canola plasma membrane 95.34 96.42
CDX74016 Canola extracellular, plasma membrane, vacuole 22.39 86.96
CDY07957 Canola plasma membrane 83.58 84.69
CDY07959 Canola plasma membrane 83.77 84.56
CDX74014 Canola plasma membrane 83.4 84.5
CDY22150 Canola cytosol, plasma membrane, vacuole 83.21 84.47
CDX74015 Canola plasma membrane 80.41 84.18
AT3G08040.1 Thale cress cytosol, plasma membrane, vacuole 80.6 82.13
CDY27977 Canola endoplasmic reticulum, extracellular, plasma membrane 31.34 81.95
CDY27978 Canola plasma membrane 58.96 69.0
KRH27482 Soybean plasma membrane 39.37 66.14
VIT_13s0064g00930.t01 Wine grape plasma membrane 63.43 63.43
VIT_13s0064g00940.t01 Wine grape plasma membrane 63.62 62.34
Solyc01g087150.2.1 Tomato plasma membrane 59.14 60.38
PGSC0003DMT400017700 Potato plasma membrane 59.89 59.78
PGSC0003DMT400017707 Potato cytosol, plasma membrane, vacuole 59.7 59.59
KRH13953 Soybean plasma membrane 60.07 58.23
KRH37984 Soybean cytosol, plasma membrane, vacuole 60.07 57.91
GSMUA_Achr4P06960_001 Banana plasma membrane 53.73 57.37
KRH27481 Soybean plasma membrane 53.92 55.26
GSMUA_Achr3P29780_001 Banana plasma membrane 53.17 55.02
CDY29628 Canola plasma membrane 52.61 54.65
CDY01220 Canola plasma membrane 52.61 54.55
CDY66973 Canola plasma membrane 52.61 54.55
EES14441 Sorghum plasma membrane 53.36 54.48
TraesCS1A01G305200.1 Wheat plasma membrane 50.0 53.92
TraesCS1D01G304800.1 Wheat plasma membrane 50.0 53.92
TraesCS1B01G315900.1 Wheat plasma membrane 49.81 53.72
CDY65471 Canola plasma membrane 52.05 53.65
CDY03629 Canola plasma membrane 52.05 53.65
HORVU1Hr1G068960.15 Barley plasma membrane 49.81 51.84
KRH20827 Soybean cytosol, plasma membrane, vacuole 40.67 50.93
Zm00001d035115_P004 Maize plasma membrane 50.37 43.9
Zm00001d025649_P001 Maize plasma membrane 14.18 40.43
Zm00001d042411_P001 Maize plastid 17.72 36.68
CDY07737 Canola plastid 36.19 36.4
Zm00001d007814_P001 Maize mitochondrion 19.4 36.24
CDY63154 Canola plastid 34.33 36.01
CDY65815 Canola plasma membrane 20.34 24.72
CDY12082 Canola plastid 35.63 24.3
CDX90273 Canola plastid 35.07 23.89
CDX83192 Canola plastid 21.27 21.27
CDX82020 Canola plastid 21.08 20.36
CDY42600 Canola mitochondrion 19.78 19.78
CDY41956 Canola mitochondrion 19.78 19.78
Protein Annotations
MapMan:24.2.4.1.1MapMan:24.2.4.1.3MapMan:25.4.6.1GO:A0A078HC63UniProt:A0A078HC63EnsemblPlants:CDY35980
ProteinID:CDY35980ProteinID:CDY35980.1ncoils:CoilGO:GO:0003674GO:GO:0005215GO:GO:0005575
GO:GO:0006810GO:GO:0006855GO:GO:0008150GO:GO:0015238GO:GO:0015297GO:GO:0016020
GO:GO:0016021GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00059538001InterPro:MATE_famPFAM:PF01554PANTHER:PTHR42893
PANTHER:PTHR42893:SF7TIGRFAMs:TIGR00797TMHMM:TMhelixUniParc:UPI0004EEE274SEG:seg:
Description
BnaA05g29700DProtein DETOXIFICATION [Source:UniProtKB/TrEMBL;Acc:A0A078HC63]
Coordinates
chrLK032364:-:273990..277568
Molecular Weight (calculated)
56714.1 Da
IEP (calculated)
10.020
GRAVY (calculated)
0.554
Length
536 amino acids
Sequence
(BLAST)
001: MTETGDLNSV PAIGIRPIPF LFIFKDLTHV FSMDPIGREI LSMAFPAALA LASDPVASLI DTAFIGRLGA VELAAVGVSI AIFQQASRIT IFPIVSVTTS
101: FVAEEDTLEK IKEEEEEANK AKNVHANTLA IQDSLEKGVT STTSNNKNQP QQTPVDVKLT SDTKSNNGNK ANKKGKKTIK SASTAMIIGL TLGLVQAIVL
201: IFSSKVLIGI MGVKPNSAVL SPAQKYLTIR ALGAPALLLS LSMQGIFRGF KDTKTPLYAT VASDGLNIIL DPIFIFVLRL GVSGAAIAHV ISQYFMLLIL
301: LIRLAKEVNL MPPKFGDLQF GKFIRNGGLM LARTIAVTFC QTLAASMAAR LGTTPMAAFQ ICLQVWLTSS MLADGLAVAG QAILACNFAE KDYNKVTAAA
401: SRVIQMSLVL GLGLSVFVGL GLYFGSGVFS KDPAVIHLIA IGIPFVAATQ PINSLTFVLD GVNFGASDFA YTAYSMVGVA AVSIAAVIYM AKVNGFVGIW
501: IALTIYMGLR AVTGIGRMAT GTGPWKFLRG RSPSSS
Best Arabidopsis Sequence Match ( AT3G08040.1 )
(BLAST)
001: MTETGDDLAT VKKPIPFLVI FKDLRHVFSR DTTGREILGI AFPAALALAA DPIASLIDTA FVGRLGAVQL AAVGVSIAIF NQASRITIFP LVSLTTSFVA
101: EEDTMEKMKE EANKANLVHA ETILVQDSLE KGISSPTSND TNQPQQPPAP DTKSNSGNKS NKKEKRTIRT ASTAMILGLI LGLVQAIFLI FSSKLLLGVM
201: GVKPNSPMLS PAHKYLSIRA LGAPALLLSL AMQGIFRGFK DTKTPLFATV VADVINIVLD PIFIFVLRLG IIGAAIAHVI SQYFMTLILF VFLAKKVNLI
301: PPNFGDLQFG RFLKNGLLLL ARTIAVTFCQ TLAAAMAARL GTTPMAAFQI CLQVWLTSSL LNDGLAVAGQ AILACSFAEK DYNKVTAVAS RVLQMGFVLG
401: LGLSVFVGLG LYFGAGVFSK DPAVIHLMAI GIPFIAATQP INSLAFVLDG VNFGASDFAY TAYSMVGVAA ISIAAVIYMA KTNGFIGIWI ALTIYMALRA
501: ITGIARMATG TGPWRFLRGR SSSSSS
Arabidopsis Description
DTX43Protein DETOXIFICATION 43 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFB0]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.