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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 3
  • mitochondrion 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:mitochondrion, plasma membrane, plastid
BaCelLo:plastid
iPSORT:plastid
MultiLoc:mitochondrion
Predotar:plastid
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70995
CDX88803
CDX92368
CDY09128
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G08040.1 CDX70995 AT5G22290.1 21798944
AT3G08040.1 CDX88803 AT5G22290.1 21798944
AT3G08040.1 CDX92368 AT5G22290.1 21798944
AT3G08040.1 CDY09128 AT5G22290.1 21798944
AT3G08040.1 CDY35676 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY28001 Canola plasma membrane 68.34 59.06
CDY35980 Canola plasma membrane 69.0 58.96
CDX74015 Canola plasma membrane 58.52 52.34
CDY07957 Canola plasma membrane 58.52 50.66
CDY07959 Canola plasma membrane 58.73 50.66
CDX74014 Canola plasma membrane 58.3 50.47
CDY22150 Canola cytosol, plasma membrane, vacuole 57.64 50.0
AT3G08040.1 Thale cress cytosol, plasma membrane, vacuole 52.62 45.82
KRH20827 Soybean cytosol, plasma membrane, vacuole 36.68 39.25
VIT_13s0064g00930.t01 Wine grape plasma membrane 40.61 34.7
VIT_13s0064g00940.t01 Wine grape plasma membrane 40.61 34.0
Solyc01g087150.2.1 Tomato plasma membrane 37.12 32.38
PGSC0003DMT400017700 Potato plasma membrane 37.77 32.22
PGSC0003DMT400017707 Potato cytosol, plasma membrane, vacuole 37.77 32.22
KRH37984 Soybean cytosol, plasma membrane, vacuole 37.77 31.12
KRH13953 Soybean plasma membrane 37.55 31.1
GSMUA_Achr4P06960_001 Banana plasma membrane 33.41 30.48
CDY29628 Canola plasma membrane 33.84 30.04
CDY01220 Canola plasma membrane 33.84 29.98
CDY66973 Canola plasma membrane 33.84 29.98
GSMUA_Achr3P29780_001 Banana plasma membrane 33.62 29.73
EES14441 Sorghum plasma membrane 34.06 29.71
CDY65471 Canola plasma membrane 33.19 29.23
CDY03629 Canola plasma membrane 33.19 29.23
KRH27481 Soybean plasma membrane 32.31 28.3
TraesCS1A01G305200.1 Wheat plasma membrane 30.57 28.17
TraesCS1B01G315900.1 Wheat plasma membrane 30.57 28.17
TraesCS1D01G304800.1 Wheat plasma membrane 30.57 28.17
HORVU1Hr1G068960.15 Barley plasma membrane 30.13 26.8
Zm00001d035115_P004 Maize plasma membrane 34.06 25.37
CDY07737 Canola plastid 24.89 21.39
KRH27482 Soybean plasma membrane 14.85 21.32
CDY63154 Canola plastid 22.71 20.35
CDY65815 Canola plasma membrane 15.72 16.33
CDX83192 Canola plastid 16.81 14.37
CDX82020 Canola plastid 16.16 13.33
CDY12082 Canola plastid 22.71 13.23
CDY42600 Canola mitochondrion 15.28 13.06
CDY41956 Canola mitochondrion 15.28 13.06
CDX90273 Canola plastid 22.27 12.96
Zm00001d025649_P001 Maize plasma membrane 4.15 10.11
Zm00001d042411_P001 Maize plastid 4.37 7.72
Zm00001d007814_P001 Maize mitochondrion 4.15 6.62
CDX74016 Canola extracellular, plasma membrane, vacuole 0.22 0.72
CDY27977 Canola endoplasmic reticulum, extracellular, plasma membrane 0.0 0.0
Protein Annotations
MapMan:24.2.4.1.3GO:A0A078GTK4UniProt:A0A078GTK4EnsemblPlants:CDY27978ProteinID:CDY27978ProteinID:CDY27978.1
GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0006855GO:GO:0008150
GO:GO:0015238GO:GO:0015297GO:GO:0016020GO:GO:0016021GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00038901001
InterPro:MATE_famPFAM:PF01554PANTHER:PTHR42893PANTHER:PTHR42893:SF7TIGRFAMs:TIGR00797TMHMM:TMhelix
UniParc:UPI0004EE5630SEG:seg::::
Description
BnaC05g43800DProtein DETOXIFICATION [Source:UniProtKB/TrEMBL;Acc:A0A078GTK4]
Coordinates
chrLK032213:-:63818..67196
Molecular Weight (calculated)
49397.4 Da
IEP (calculated)
9.888
GRAVY (calculated)
0.230
Length
458 amino acids
Sequence
(BLAST)
001: MGSMLVLVVP CKISTSTNTN RNKCIIYYNS QEHRSDDTSH INVATGCLVL LLPVAVGGRA DTVREIHTTL SRQRLSIVEV VRRERDSSDS IFYATANALT
101: VHRDTTSTKT VVSKRRSRSM TETGDLNSVP ASGIRPIPFL VIFKDLTQVH VFSMDAIGRE ILSMAFPAAL ALASDPVASL IDTAFIGRLG AVELAAVELA
201: AVGVSIAIFQ QASRITIFPI VSVTTSFVAE EDTLEKMMEE EAEEEANKAK NVHANTLAIQ DSLEKGVAST TSNNKNQPQQ TPVDVKLTSD TKSNNGNKAN
301: KKGKKTIKSA STAMIIGLTL GLVQAIVLIF SSKVLIGIME VKPNSAVLSP AQKYLTIRSL GAPALLLSLS VQGIFRGFKD TKTPLYALLV IASDGLNIIL
401: DPIFIFVLRL GVSGAAIAHV ISQYFMLLIL LIRLAKEVNL MPPKFGDLQF GKFIRNGG
Best Arabidopsis Sequence Match ( AT1G51340.2 )
(BLAST)
001: MMSEDGYNTD FPRNPLYIFF SDFRSVLKFD ELGLEIARIA LPAALALTAD PIASLVDTAF IGQIGPVELA AVGVSIALFN QVSRIAIFPL VSITTSFVAE
101: EDACSSQQDT VRDHKECIEI GINNPTEETI ELIPEKHKDS LSDEFKTSSS IFSISKPPAK KRNIPSASSA LIIGGVLGLF QAVFLISAAK PLLSFMGVKH
201: DSPMMRPSQR YLSLRSLGAP AVLLSLAAQG VFRGFKDTTT PLFATVIGDV TNIILDPIFI FVFRLGVTGA ATAHVISQYL MCGILLWKLM GQVDIFNMST
301: KHLQFCRFMK NGFLLLMRVI AVTFCVTLSA SLAAREGSTS MAAFQVCLQV WLATSLLADG YAVAGQAILA SAFAKKDYKR AAATASRVLQ LGLVLGFVLA
401: VILGAGLHFG ARVFTKDDKV LHLISIGLPF VAGTQPINAL AFVFDGVNFG ASDFGYAAAS LVMVAIVSIL CLLFLSSTHG FIGLWFGLTI YMSLRAAVGF
501: WRIGTGTGPW SFLRS
Arabidopsis Description
DTX42Protein DETOXIFICATION [Source:UniProtKB/TrEMBL;Acc:A0A178W9H8]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.