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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 6
  • golgi 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:plasma membrane
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70995
CDX88803
CDX92368
CDY09128
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G08040.1 CDX70995 AT5G22290.1 21798944
AT3G08040.1 CDX88803 AT5G22290.1 21798944
AT3G08040.1 CDX92368 AT5G22290.1 21798944
AT3G08040.1 CDY09128 AT5G22290.1 21798944
AT3G08040.1 CDY35676 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra001282.1-P Field mustard plasma membrane 100.0 100.0
CDY07959 Canola plasma membrane 98.63 95.1
CDX74014 Canola plasma membrane 94.73 91.68
CDY07957 Canola plasma membrane 94.73 91.68
CDY22150 Canola cytosol, plasma membrane, vacuole 88.67 85.98
AT3G08040.1 Thale cress cytosol, plasma membrane, vacuole 84.57 82.32
CDY28001 Canola plasma membrane 84.96 82.08
CDX74016 Canola extracellular, plasma membrane, vacuole 22.07 81.88
CDY35980 Canola plasma membrane 84.18 80.41
CDY27977 Canola endoplasmic reticulum, extracellular, plasma membrane 29.49 73.66
KRH27482 Soybean plasma membrane 38.48 61.76
VIT_13s0064g00930.t01 Wine grape plasma membrane 64.06 61.19
VIT_13s0064g00940.t01 Wine grape plasma membrane 62.7 58.68
CDY27978 Canola plasma membrane 52.34 58.52
Solyc01g087150.2.1 Tomato plasma membrane 59.57 58.1
PGSC0003DMT400017700 Potato plasma membrane 60.16 57.36
PGSC0003DMT400017707 Potato cytosol, plasma membrane, vacuole 59.38 56.61
KRH13953 Soybean plasma membrane 60.94 56.42
KRH37984 Soybean cytosol, plasma membrane, vacuole 60.94 56.12
GSMUA_Achr3P29780_001 Banana plasma membrane 56.25 55.6
GSMUA_Achr4P06960_001 Banana plasma membrane 54.1 55.18
CDY29628 Canola plasma membrane 54.88 54.46
CDY01220 Canola plasma membrane 54.88 54.35
CDY66973 Canola plasma membrane 54.88 54.35
TraesCS1A01G305200.1 Wheat plasma membrane 52.54 54.12
TraesCS1D01G304800.1 Wheat plasma membrane 52.34 53.92
KRH27481 Soybean plasma membrane 55.08 53.92
EES14441 Sorghum plasma membrane 55.27 53.9
TraesCS1B01G315900.1 Wheat plasma membrane 52.15 53.72
CDY65471 Canola plasma membrane 54.1 53.27
CDY03629 Canola plasma membrane 54.1 53.27
KRH20827 Soybean cytosol, plasma membrane, vacuole 43.55 52.1
HORVU1Hr1G068960.15 Barley plasma membrane 52.34 52.04
Zm00001d035115_P004 Maize plasma membrane 51.95 43.25
Zm00001d025649_P001 Maize plasma membrane 14.45 39.36
Zm00001d042411_P001 Maize plastid 18.75 37.07
CDY07737 Canola plastid 37.89 36.4
CDY63154 Canola plastid 35.94 36.01
Zm00001d007814_P001 Maize mitochondrion 19.92 35.54
CDY65815 Canola plasma membrane 21.88 25.4
CDY12082 Canola plastid 37.11 24.17
CDX90273 Canola plastid 36.72 23.89
CDX83192 Canola plastid 22.66 21.64
CDX82020 Canola plastid 22.66 20.9
CDY42600 Canola mitochondrion 19.73 18.84
CDY41956 Canola mitochondrion 19.73 18.84
Protein Annotations
MapMan:24.2.4.1.1MapMan:24.2.4.1.3MapMan:25.4.6.1GO:A0A078CB70EnsemblPlants:CDX74015ProteinID:CDX74015
ProteinID:CDX74015.1ncoils:CoilGO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810
GO:GO:0006855GO:GO:0008150GO:GO:0015238GO:GO:0015297GO:GO:0016020GO:GO:0055085
EnsemblPlantsGene:GSBRNA2T00111752001InterPro:MATE_famPFAM:PF01554PANTHER:PTHR42893PANTHER:PTHR42893:SF7TIGRFAMs:TIGR00797
TMHMM:TMhelixUniParc:UPI0002540540SEG:seg:::
Description
BnaA03g30320D
Coordinates
chrLK031800:+:940372..943487
Molecular Weight (calculated)
54116.0 Da
IEP (calculated)
9.763
GRAVY (calculated)
0.660
Length
512 amino acids
Sequence
(BLAST)
001: MTETGDLTSV PASVVTQIPF LVIFNELTRV FSKDAIGREI LGIAFPAALA LAADPIASLI DTAYIGRLGA VELAAVGVSI AIFNQASRIT IFPIVSVTTS
101: FVAEENTMEK IKEEEEEAKK NNRVHANTLA VQDSLEKGIA SPTSNNMNQP QQTPASDTKS SSGNKANKKG KKNIKSASTA MIIGLILGLV QAIFLIFSSK
201: VLLGVMGVKP NSAVLSPAHK YLTIRSLGAP ALLLSLSMQG IFRGFKDTKT PLYATIVADV INIILDPIFI FVLHLGISGA AIAHVISQYF MTLILFTRLA
301: SKVNLMPPNF AALQFGKFLK NGGLLLARTI AVTFCQTLAA AMAARLGATP MAAFQICLQV WLTTSLLADG LAVAGQAILA CSFTEKDYNK VSSCASRVLQ
401: MGFVLGLGLS VFVGLGLYFG AGIFTKDPAV IHLIAIGIPF VAATQPINSL AFVLDGVNFG ASDFAYTAYS MVGVAAISIA AIIYMAKFNG FLGIWIALTI
501: YMGLRAITGI AR
Best Arabidopsis Sequence Match ( AT1G51340.2 )
(BLAST)
001: MMSEDGYNTD FPRNPLYIFF SDFRSVLKFD ELGLEIARIA LPAALALTAD PIASLVDTAF IGQIGPVELA AVGVSIALFN QVSRIAIFPL VSITTSFVAE
101: EDACSSQQDT VRDHKECIEI GINNPTEETI ELIPEKHKDS LSDEFKTSSS IFSISKPPAK KRNIPSASSA LIIGGVLGLF QAVFLISAAK PLLSFMGVKH
201: DSPMMRPSQR YLSLRSLGAP AVLLSLAAQG VFRGFKDTTT PLFATVIGDV TNIILDPIFI FVFRLGVTGA ATAHVISQYL MCGILLWKLM GQVDIFNMST
301: KHLQFCRFMK NGFLLLMRVI AVTFCVTLSA SLAAREGSTS MAAFQVCLQV WLATSLLADG YAVAGQAILA SAFAKKDYKR AAATASRVLQ LGLVLGFVLA
401: VILGAGLHFG ARVFTKDDKV LHLISIGLPF VAGTQPINAL AFVFDGVNFG ASDFGYAAAS LVMVAIVSIL CLLFLSSTHG FIGLWFGLTI YMSLRAAVGF
501: WRIGTGTGPW SFLRS
Arabidopsis Description
DTX42Protein DETOXIFICATION [Source:UniProtKB/TrEMBL;Acc:A0A178W9H8]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.