CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 5
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plasma membrane
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX88803
CDX92368
CDY09128
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G08040.1	CDX70995	AT5G22290.1	21798944
AT3G08040.1	CDX88803	AT5G22290.1	21798944
AT3G08040.1	CDX92368	AT5G22290.1	21798944
AT3G08040.1	CDY09128	AT5G22290.1	21798944
AT3G08040.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74015	Canola	plasma membrane	95.1	98.63
CDX74016	Canola	extracellular, plasma membrane, vacuole	24.86	95.65
CDX74014	Canola	plasma membrane	94.92	95.27
CDY07957	Canola	plasma membrane	94.92	95.27
CDY22150	Canola	cytosol, plasma membrane, vacuole	89.45	89.96
AT3G08040.1	Thale cress	cytosol, plasma membrane, vacuole	85.12	85.93
CDY28001	Canola	plasma membrane	84.75	84.91
CDY35980	Canola	plasma membrane	84.56	83.77
CDY27977	Canola	endoplasmic reticulum, extracellular, plasma membrane	29.0	75.12
KRH27482	Soybean	plasma membrane	38.98	64.89
VIT_13s0064g00930.t01	Wine grape	plasma membrane	63.84	63.25
VIT_13s0064g00940.t01	Wine grape	plasma membrane	63.09	61.24
Solyc01g087150.2.1	Tomato	plasma membrane	59.7	60.38
PGSC0003DMT400017700	Potato	plasma membrane	60.08	59.4
KRH13953	Soybean	plasma membrane	61.21	58.77
CDY27978	Canola	plasma membrane	50.66	58.73
PGSC0003DMT400017707	Potato	cytosol, plasma membrane, vacuole	59.32	58.66
KRH37984	Soybean	cytosol, plasma membrane, vacuole	61.02	58.27
GSMUA_Achr4P06960_001	Banana	plasma membrane	54.61	57.77
GSMUA_Achr3P29780_001	Banana	plasma membrane	55.93	57.34
CDY29628	Canola	plasma membrane	54.8	56.4
CDY01220	Canola	plasma membrane	54.8	56.29
CDY66973	Canola	plasma membrane	54.8	56.29
TraesCS1A01G305200.1	Wheat	plasma membrane	52.54	56.14
KRH27481	Soybean	plasma membrane	55.18	56.02
TraesCS1D01G304800.1	Wheat	plasma membrane	52.35	55.94
TraesCS1B01G315900.1	Wheat	plasma membrane	52.17	55.73
EES14441	Sorghum	plasma membrane	54.99	55.62
CDY65471	Canola	plasma membrane	54.05	55.19
CDY03629	Canola	plasma membrane	54.05	55.19
HORVU1Hr1G068960.15	Barley	plasma membrane	52.35	53.98
KRH20827	Soybean	cytosol, plasma membrane, vacuole	42.18	52.34
Zm00001d035115_P004	Maize	plasma membrane	51.79	44.72
Zm00001d025649_P001	Maize	plasma membrane	14.12	39.89
Zm00001d042411_P001	Maize	plastid	18.27	37.45
CDY07737	Canola	plastid	37.29	37.15
CDY63154	Canola	plastid	35.4	36.79
Zm00001d007814_P001	Maize	mitochondrion	19.77	36.59
CDY65815	Canola	plasma membrane	21.28	25.62
CDY12082	Canola	plastid	36.53	24.68
CDX90273	Canola	plastid	36.16	24.4
CDX83192	Canola	plastid	22.03	21.83
CDX82020	Canola	plastid	22.03	21.08
CDY42600	Canola	mitochondrion	19.59	19.4
CDY41956	Canola	mitochondrion	19.59	19.4

Protein Annotations

MapMan:24.2.4.1.1	MapMan:24.2.4.1.3	MapMan:25.4.6.1	GO:A0A078F4J7	UniProt:A0A078F4J7	EnsemblPlants:CDY07959
ProteinID:CDY07959	ProteinID:CDY07959.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0006855	GO:GO:0008150	GO:GO:0015238	GO:GO:0015297	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00125172001	InterPro:MATE_fam	PFAM:PF01554	PANTHER:PTHR42893
PANTHER:PTHR42893:SF7	TIGRFAMs:TIGR00797	TMHMM:TMhelix	UniParc:UPI0004EAC694	SEG:seg	:

Description

BnaC03g35640DProtein DETOXIFICATION [Source:UniProtKB/TrEMBL;Acc:A0A078F4J7]

Coordinates

chrLK031982:+:317437..320959

Molecular Weight (calculated)

55996.3 Da

IEP (calculated)

10.023

GRAVY (calculated)

0.631

Length

531 amino acids

Sequence
(BLAST)

001: MTETGDLTSV PASVVTQIPF LVIFKELTRV FSKDAIGREI LGIAFPAALA LAADPIASLI DTAYIGRLGA VELAAVGVSI AIFNQASRIT IFPIVSVTTS
101: FVAEEDTMEK LKEEEKEAKK NNLVHANTLA VQDSLEKGIA SPTSNNMNQP QQTPASDTKS SSGNKANKKG KKNIKSASTA MIIGLILGLV QAIFLIFSSK
201: VLLGVMGVKP NSAVLSPAHK YLTIRSLGAP ALLLSLSMQG IFRGFKDTKT PLYATIVADV INIILDPIFI FVLHLGISGA AIAHVISQYF MTLILFTRLA
301: SKVNLMPPNF AALQFGKFLK NGGLLLARTI AVTFCQTLAA AMAARLGATP MAAFQICLQV WLTTSLLADG LAVAGQAILA CSFAEKDDNK VSSCASRVLQ
401: MGFVLGLGLS VFVGLGLYFG AGIFTKDPAV IHLIAIGIPF VAATQPINSL AFVLDGVNFG ASDFAYTAYS MVGVAAISIA AIIYMAKFNG FLGIWIALTI
501: YMGLRAITGI ARIATGTGPW KFLRGRSPSS S

Best Arabidopsis Sequence Match ( AT3G08040.2 )
(BLAST)

001: MEKMKEEANK ANLVHAETIL VQDSLEKGIS SPTSNDTNQP QQPPAPDTKS NSGNKSNKKE KRTIRTASTA MILGLILGLV QAIFLIFSSK LLLGVMGVKP
101: NSPMLSPAHK YLSIRALGAP ALLLSLAMQG IFRGFKDTKT PLFATVVADV INIVLDPIFI FVLRLGIIGA AIAHVISQYF MTLILFVFLA KKVNLIPPNF
201: GDLQFGRFLK NGLLLLARTI AVTFCQTLAA AMAARLGTTP MAAFQICLQV WLTSSLLNDG LAVAGQAILA CSFAEKDYNK VTAVASRVLQ MGFVLGLGLS
301: VFVGLGLYFG AGVFSKDPAV IHLMAIGIPF IAATQPINSL AFVLDGVNFG ASDFAYTAYS MVGVAAISIA AVIYMAKTNG FIGIWIALTI YMALRAITGI
401: ARMATGTGPW RFLRGRSSSS SS

Arabidopsis Description

DTX43Protein DETOXIFICATION 43 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFB0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.