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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • peroxisome 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, peroxisome, plasma membrane
BaCelLo:nucleus
MultiLoc:peroxisome
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70995
CDX88803
CDX92368
CDY09128
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G08040.1 CDX70995 AT5G22290.1 21798944
AT3G08040.1 CDX88803 AT5G22290.1 21798944
AT3G08040.1 CDX92368 AT5G22290.1 21798944
AT3G08040.1 CDY09128 AT5G22290.1 21798944
AT3G08040.1 CDY35676 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY35980 Canola plasma membrane 96.42 95.34
CDX74015 Canola plasma membrane 82.08 84.96
CDY07959 Canola plasma membrane 84.91 84.75
CDY07957 Canola plasma membrane 84.34 84.5
CDX74014 Canola plasma membrane 84.15 84.31
CDY22150 Canola cytosol, plasma membrane, vacuole 83.77 84.09
CDX74016 Canola extracellular, plasma membrane, vacuole 21.89 84.06
CDY27977 Canola endoplasmic reticulum, extracellular, plasma membrane 31.89 82.44
AT3G08040.1 Thale cress cytosol, plasma membrane, vacuole 81.32 81.94
CDY27978 Canola plasma membrane 59.06 68.34
KRH27482 Soybean plasma membrane 40.0 66.46
VIT_13s0064g00930.t01 Wine grape plasma membrane 63.77 63.06
VIT_13s0064g00940.t01 Wine grape plasma membrane 63.77 61.79
Solyc01g087150.2.1 Tomato plasma membrane 59.62 60.19
PGSC0003DMT400017707 Potato cytosol, plasma membrane, vacuole 59.81 59.03
PGSC0003DMT400017700 Potato plasma membrane 59.81 59.03
KRH13953 Soybean plasma membrane 60.57 58.05
KRH37984 Soybean cytosol, plasma membrane, vacuole 60.57 57.73
GSMUA_Achr4P06960_001 Banana plasma membrane 54.34 57.37
KRH27481 Soybean plasma membrane 55.09 55.83
GSMUA_Achr3P29780_001 Banana plasma membrane 54.15 55.41
CDY29628 Canola plasma membrane 53.4 54.84
CDY01220 Canola plasma membrane 53.21 54.55
CDY66973 Canola plasma membrane 53.21 54.55
EES14441 Sorghum plasma membrane 53.96 54.48
TraesCS1A01G305200.1 Wheat plasma membrane 50.57 53.92
TraesCS1D01G304800.1 Wheat plasma membrane 50.57 53.92
CDY65471 Canola plasma membrane 52.83 53.85
CDY03629 Canola plasma membrane 52.83 53.85
TraesCS1B01G315900.1 Wheat plasma membrane 50.38 53.72
HORVU1Hr1G068960.15 Barley plasma membrane 50.57 52.04
KRH20827 Soybean cytosol, plasma membrane, vacuole 41.7 51.64
Zm00001d035115_P004 Maize plasma membrane 50.94 43.9
Zm00001d025649_P001 Maize plasma membrane 14.15 39.89
Zm00001d042411_P001 Maize plastid 17.74 36.29
Zm00001d007814_P001 Maize mitochondrion 19.43 35.89
CDY07737 Canola plastid 35.85 35.65
CDY63154 Canola plastid 33.96 35.23
CDY65815 Canola plasma membrane 20.57 24.72
CDY12082 Canola plastid 35.85 24.17
CDX90273 Canola plastid 35.47 23.89
CDX83192 Canola plastid 21.32 21.08
CDX82020 Canola plastid 21.13 20.18
CDY42600 Canola mitochondrion 20.0 19.78
CDY41956 Canola mitochondrion 20.0 19.78
Protein Annotations
MapMan:24.2.4.1.1MapMan:24.2.4.1.3MapMan:25.4.6.1GO:A0A078GRF9UniProt:A0A078GRF9EnsemblPlants:CDY28001
ProteinID:CDY28001ProteinID:CDY28001.1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810
GO:GO:0006855GO:GO:0008150GO:GO:0015238GO:GO:0015297GO:GO:0016020GO:GO:0016021
GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00038927001InterPro:MATE_famPFAM:PF01554PANTHER:PTHR42893PANTHER:PTHR42893:SF7
TIGRFAMs:TIGR00797TMHMM:TMhelixUniParc:UPI0004EF0E30SEG:seg::
Description
BnaC05g44030DProtein DETOXIFICATION [Source:UniProtKB/TrEMBL;Acc:A0A078GRF9]
Coordinates
chrLK032213:+:155342..159190
Molecular Weight (calculated)
56031.4 Da
IEP (calculated)
10.223
GRAVY (calculated)
0.561
Length
530 amino acids
Sequence
(BLAST)
001: MTETGDLNSV PASGIRPIPF LVIFKDLTRV FSMDATGREI LSMAFPAALA LASDPVASLI DTAFIGRLGA VELAAVGVSI AIFQQASRIT IFPIVSVTTS
101: FVAEEDTLEK MKEEEANKAN LVHANTLAVQ DSLEKGVAST TSNNKNQPQQ TPVDAKLTSD TKSNNGNKGK KKGKKTIKSA STAMIIGLTL GLVQAIVLIF
201: SSKVLIGIMG VKPNSAVLSP AQKYLTIRSL GAPALLLSLS MQGIFRGFKD TKTPLYATVA SDGLNIILDP IFIFVLRLGV SGAAIAHVIS QYFMLLILLI
301: RLAKEVNLMP PKFGDLQFGK FIRNGGLMLA RTIAVTFCQT LAASMAARLG TTPMAAFQIC LQVWLTSSML ADGLAVAGQA ILACNFAEKD YNKVTAAASR
401: VIQMSFVLGL GLSVFVGLGL YFGSGVFSKD PAVIHLIAIG IPFVAATQPI NSLTFVLDGV NFGASDFAYT AYSMVGVAAV SIAAVIYMAK SNGFVGIWIA
501: LTIYMGLRAI TGMGRMATGT GPWKFLRGRL
Best Arabidopsis Sequence Match ( AT3G08040.1 )
(BLAST)
001: MTETGDDLAT VKKPIPFLVI FKDLRHVFSR DTTGREILGI AFPAALALAA DPIASLIDTA FVGRLGAVQL AAVGVSIAIF NQASRITIFP LVSLTTSFVA
101: EEDTMEKMKE EANKANLVHA ETILVQDSLE KGISSPTSND TNQPQQPPAP DTKSNSGNKS NKKEKRTIRT ASTAMILGLI LGLVQAIFLI FSSKLLLGVM
201: GVKPNSPMLS PAHKYLSIRA LGAPALLLSL AMQGIFRGFK DTKTPLFATV VADVINIVLD PIFIFVLRLG IIGAAIAHVI SQYFMTLILF VFLAKKVNLI
301: PPNFGDLQFG RFLKNGLLLL ARTIAVTFCQ TLAAAMAARL GTTPMAAFQI CLQVWLTSSL LNDGLAVAGQ AILACSFAEK DYNKVTAVAS RVLQMGFVLG
401: LGLSVFVGLG LYFGAGVFSK DPAVIHLMAI GIPFIAATQP INSLAFVLDG VNFGASDFAY TAYSMVGVAA ISIAAVIYMA KTNGFIGIWI ALTIYMALRA
501: ITGIARMATG TGPWRFLRGR SSSSSS
Arabidopsis Description
DTX43Protein DETOXIFICATION 43 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFB0]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.