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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70995
CDX88803
CDX92368
CDY09128
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G08040.1 CDX70995 AT5G22290.1 21798944
AT3G08040.1 CDX88803 AT5G22290.1 21798944
AT3G08040.1 CDX92368 AT5G22290.1 21798944
AT3G08040.1 CDY09128 AT5G22290.1 21798944
AT3G08040.1 CDY35676 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX74014 Canola plasma membrane 99.24 99.24
CDY07959 Canola plasma membrane 95.27 94.92
CDX74015 Canola plasma membrane 91.68 94.73
CDX74016 Canola extracellular, plasma membrane, vacuole 24.39 93.48
CDY22150 Canola cytosol, plasma membrane, vacuole 89.79 89.96
AT3G08040.1 Thale cress cytosol, plasma membrane, vacuole 84.69 85.17
CDY28001 Canola plasma membrane 84.5 84.34
CDY35980 Canola plasma membrane 84.69 83.58
CDY27977 Canola endoplasmic reticulum, extracellular, plasma membrane 29.3 75.61
KRH27482 Soybean plasma membrane 39.7 65.83
VIT_13s0064g00930.t01 Wine grape plasma membrane 63.89 63.06
VIT_13s0064g00940.t01 Wine grape plasma membrane 62.95 60.88
Solyc01g087150.2.1 Tomato plasma membrane 59.74 60.19
PGSC0003DMT400017700 Potato plasma membrane 59.92 59.03
KRH13953 Soybean plasma membrane 61.63 58.95
CDY27978 Canola plasma membrane 50.66 58.52
PGSC0003DMT400017707 Potato cytosol, plasma membrane, vacuole 59.17 58.29
KRH37984 Soybean cytosol, plasma membrane, vacuole 61.25 58.27
GSMUA_Achr4P06960_001 Banana plasma membrane 54.44 57.37
GSMUA_Achr3P29780_001 Banana plasma membrane 55.95 57.14
KRH27481 Soybean plasma membrane 55.58 56.21
CDY66973 Canola plasma membrane 54.63 55.9
CDY01220 Canola plasma membrane 54.63 55.9
CDY29628 Canola plasma membrane 54.44 55.81
EES14441 Sorghum plasma membrane 55.01 55.43
TraesCS1A01G305200.1 Wheat plasma membrane 51.98 55.33
TraesCS1D01G304800.1 Wheat plasma membrane 51.8 55.13
CDY65471 Canola plasma membrane 54.06 55.0
CDY03629 Canola plasma membrane 54.06 55.0
TraesCS1B01G315900.1 Wheat plasma membrane 51.61 54.93
HORVU1Hr1G068960.15 Barley plasma membrane 51.8 53.2
KRH20827 Soybean cytosol, plasma membrane, vacuole 42.34 52.34
Zm00001d035115_P004 Maize plasma membrane 51.8 44.55
Zm00001d025649_P001 Maize plasma membrane 14.18 39.89
CDY07737 Canola plastid 37.05 36.77
Zm00001d042411_P001 Maize plastid 17.96 36.68
CDY63154 Canola plastid 35.16 36.4
Zm00001d007814_P001 Maize mitochondrion 19.66 36.24
CDY65815 Canola plasma membrane 21.17 25.4
CDY12082 Canola plastid 36.11 24.3
CDX90273 Canola plastid 35.73 24.02
CDX83192 Canola plastid 22.12 21.83
CDX82020 Canola plastid 22.12 21.08
CDY42600 Canola mitochondrion 19.66 19.4
CDY41956 Canola mitochondrion 19.66 19.4
Protein Annotations
MapMan:24.2.4.1.1MapMan:24.2.4.1.3MapMan:25.4.6.1GO:A0A078F4G7UniProt:A0A078F4G7EnsemblPlants:CDY07957
ProteinID:CDY07957ProteinID:CDY07957.1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810
GO:GO:0006855GO:GO:0008150GO:GO:0015238GO:GO:0015297GO:GO:0016020GO:GO:0016021
GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00125170001InterPro:MATE_famPFAM:PF01554PANTHER:PTHR42893PANTHER:PTHR42893:SF7
TIGRFAMs:TIGR00797TMHMM:TMhelixUniParc:UPI0004EB470FSEG:seg::
Description
BnaC03g35660DProtein DETOXIFICATION [Source:UniProtKB/TrEMBL;Acc:A0A078F4G7]
Coordinates
chrLK031982:+:306314..309372
Molecular Weight (calculated)
55967.4 Da
IEP (calculated)
10.008
GRAVY (calculated)
0.655
Length
529 amino acids
Sequence
(BLAST)
001: MTETSDHTSV PASVVTQIPF LVIFKDLTHV FSKDAIGREI LGIAFPAALA LAADPIASLI DTAYIGRLGA VELAAVGVSI AIFNQASRIT IFPIVSVTTS
101: FVAQEDTMEK MKEDEAKKNK LVHANTLAVQ DSLEKGIASP TSNNINQPQQ TPALDAKPSC GNKANKKEKK NIKSASTAMI IGLILGLVQA IVLIFSSKVL
201: LGVMGVKPNS AVLSPAHKYL TIRSLGAPAL LLSLSMQGIF RGFKDTKTPL YATIVADVIN IILDPIFIFV LHLGVSGAAI AHVISQYFMT LILFIRLASK
301: VNLMPPNFGA LQFGKFLKNG GLLLARTIAV TFCQTLAAAM AARLGTIPMA AFQICLQVWL TTSLLADGLA VAGQAILACS FAEKDYNKVS SAASRVLQMG
401: FVLGLGLSVF VGLGLYFGAG IFTKDPAVIH LIAIGIPFVA ATQPINSLAF VLDGVNFGAS DFAYTAYSMV GVAAISIAAI IYMAKFNGFL GIWIALTIYM
501: GLRAITGIAR IATGTGPWRY LRGRSPSSY
Best Arabidopsis Sequence Match ( AT3G08040.1 )
(BLAST)
001: MTETGDDLAT VKKPIPFLVI FKDLRHVFSR DTTGREILGI AFPAALALAA DPIASLIDTA FVGRLGAVQL AAVGVSIAIF NQASRITIFP LVSLTTSFVA
101: EEDTMEKMKE EANKANLVHA ETILVQDSLE KGISSPTSND TNQPQQPPAP DTKSNSGNKS NKKEKRTIRT ASTAMILGLI LGLVQAIFLI FSSKLLLGVM
201: GVKPNSPMLS PAHKYLSIRA LGAPALLLSL AMQGIFRGFK DTKTPLFATV VADVINIVLD PIFIFVLRLG IIGAAIAHVI SQYFMTLILF VFLAKKVNLI
301: PPNFGDLQFG RFLKNGLLLL ARTIAVTFCQ TLAAAMAARL GTTPMAAFQI CLQVWLTSSL LNDGLAVAGQ AILACSFAEK DYNKVTAVAS RVLQMGFVLG
401: LGLSVFVGLG LYFGAGVFSK DPAVIHLMAI GIPFIAATQP INSLAFVLDG VNFGASDFAY TAYSMVGVAA ISIAAVIYMA KTNGFIGIWI ALTIYMALRA
501: ITGIARMATG TGPWRFLRGR SSSSSS
Arabidopsis Description
DTX43Protein DETOXIFICATION 43 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFB0]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.