Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 1
- endoplasmic reticulum 4
- extracellular 4
- vacuole 3
- plasma membrane 4
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G08040.1 | CDX70995 | AT5G22290.1 | 21798944 |
| AT3G08040.1 | CDX88803 | AT5G22290.1 | 21798944 |
| AT3G08040.1 | CDX92368 | AT5G22290.1 | 21798944 |
| AT3G08040.1 | CDY09128 | AT5G22290.1 | 21798944 |
| AT3G08040.1 | CDY35676 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74016 | Canola | extracellular, plasma membrane, vacuole | 50.73 | 75.36 |
| KRH27482 | Soybean | plasma membrane | 57.56 | 36.99 |
| CDY28001 | Canola | plasma membrane | 82.44 | 31.89 |
| CDY35980 | Canola | plasma membrane | 81.95 | 31.34 |
| AT3G08040.1 | Thale cress | cytosol, plasma membrane, vacuole | 76.59 | 29.85 |
| CDX74015 | Canola | plasma membrane | 73.66 | 29.49 |
| CDX74014 | Canola | plasma membrane | 75.61 | 29.3 |
| CDY07957 | Canola | plasma membrane | 75.61 | 29.3 |
| CDY07959 | Canola | plasma membrane | 75.12 | 29.0 |
| CDY22150 | Canola | cytosol, plasma membrane, vacuole | 73.17 | 28.41 |
| Zm00001d025649_P001 | Maize | plasma membrane | 24.39 | 26.6 |
| Zm00001d007814_P001 | Maize | mitochondrion | 33.17 | 23.69 |
| VIT_13s0064g00930.t01 | Wine grape | plasma membrane | 61.46 | 23.51 |
| VIT_13s0064g00940.t01 | Wine grape | plasma membrane | 62.44 | 23.4 |
| Zm00001d042411_P001 | Maize | plastid | 29.27 | 23.17 |
| Solyc01g087150.2.1 | Tomato | plasma membrane | 58.54 | 22.86 |
| KRH27481 | Soybean | plasma membrane | 57.56 | 22.56 |
| KRH13953 | Soybean | plasma membrane | 60.0 | 22.24 |
| KRH37984 | Soybean | cytosol, plasma membrane, vacuole | 60.0 | 22.12 |
| PGSC0003DMT400017700 | Potato | plasma membrane | 57.56 | 21.97 |
| GSMUA_Achr4P06960_001 | Banana | plasma membrane | 53.66 | 21.91 |
| PGSC0003DMT400017707 | Potato | cytosol, plasma membrane, vacuole | 57.07 | 21.79 |
| TraesCS1D01G304800.1 | Wheat | plasma membrane | 51.71 | 21.33 |
| TraesCS1B01G315900.1 | Wheat | plasma membrane | 51.71 | 21.33 |
| TraesCS1A01G305200.1 | Wheat | plasma membrane | 51.71 | 21.33 |
| HORVU1Hr1G068960.15 | Barley | plasma membrane | 52.2 | 20.78 |
| GSMUA_Achr3P29780_001 | Banana | plasma membrane | 52.2 | 20.66 |
| EES14441 | Sorghum | plasma membrane | 51.71 | 20.19 |
| CDY29628 | Canola | plasma membrane | 50.73 | 20.16 |
| CDY66973 | Canola | plasma membrane | 50.73 | 20.12 |
| CDY01220 | Canola | plasma membrane | 50.73 | 20.12 |
| CDY65471 | Canola | plasma membrane | 50.24 | 19.81 |
| CDY03629 | Canola | plasma membrane | 50.24 | 19.81 |
| Zm00001d035115_P004 | Maize | plasma membrane | 44.39 | 14.8 |
| CDY63154 | Canola | plastid | 32.2 | 12.92 |
| CDY07737 | Canola | plastid | 32.68 | 12.57 |
| CDY12082 | Canola | plastid | 36.1 | 9.41 |
| CDX90273 | Canola | plastid | 36.1 | 9.4 |
| KRH20827 | Soybean | cytosol, plasma membrane, vacuole | 19.02 | 9.11 |
| CDY65815 | Canola | plasma membrane | 17.07 | 7.94 |
| CDX82020 | Canola | plastid | 18.05 | 6.67 |
| CDY42600 | Canola | mitochondrion | 17.07 | 6.53 |
| CDY41956 | Canola | mitochondrion | 17.07 | 6.53 |
| CDX83192 | Canola | plastid | 17.07 | 6.53 |
| CDY27978 | Canola | plasma membrane | 0.0 | 0.0 |
Protein Annotations
| MapMan:24.2.4.1.3 | GO:A0A078GS57 | UniProt:A0A078GS57 | EnsemblPlants:CDY27977 | ProteinID:CDY27977 | ProteinID:CDY27977.1 |
| GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006855 | GO:GO:0008150 |
| GO:GO:0015238 | GO:GO:0015297 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | EnsemblPlantsGene:GSBRNA2T00038900001 |
| InterPro:MATE_fam | PFAM:PF01554 | PANTHER:PTHR42893 | PANTHER:PTHR42893:SF7 | SignalP:SignalP-noTM | TIGRFAMs:TIGR00797 |
| TMHMM:TMhelix | UniParc:UPI0004EEEA62 | SEG:seg | : | : | : |
Description
BnaC05g43790DBnaC05g43790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GS57]
Coordinates
chrLK032213:-:62648..63763
Molecular Weight (calculated)
21675.8 Da
IEP (calculated)
9.437
GRAVY (calculated)
0.748
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MAARLGTTPM AAFQICLQVW LTSSMLADGL AVAGQAILAC NFAEKDYNKV SAAASRVIQM SFALGLGLSV FVGLGLYFGS GVFSKDPAVI HLIAIGIPFV
101: AATQPINSLT FVLDGVNFGA SDFAYTAYSM VGVAAVSIVA VIYMAKSNGF VGIWIALTIY MGLRAITGIG RYFIKARRAF GKLSLPKHLC QTVQMAQINS
201: HCSDQ
101: AATQPINSLT FVLDGVNFGA SDFAYTAYSM VGVAAVSIVA VIYMAKSNGF VGIWIALTIY MGLRAITGIG RYFIKARRAF GKLSLPKHLC QTVQMAQINS
201: HCSDQ
001: MATTQIFQET LYTFSLVISV LKFDELGLEI ARIALPAALA LTADPIASLV DTAFIGQIGP VELAAVGVSI ALFNQVSRIA IFPLVSITTS FVAEEDACSS
101: QQDTVRDHKE CIEIGINNPT EETIELIPEK HKDSLSDEFK TSSSIFSISK PPAKKRNIPS ASSALIIGGV LGLFQAVFLI SAAKPLLSFM GVKHDSPMMR
201: PSQRYLSLRS LGAPAVLLSL AAQGVFRGFK DTTTPLFATV IGDVTNIILD PIFIFVFRLG VTGAATAHVI SQYLMCGILL WKLMGQVDIF NMSTKHLQFC
301: RFMKNGFLLL MRVIAVTFCV TLSASLAARE GSTSMAAFQV CLQVWLATSL LADGYAVAGQ AILASAFAKK DYKRAAATAS RVLQLGLVLG FVLAVILGAG
401: LHFGARVFTK DDKVLHLISI GLPFVAGTQP INALAFVFDG VNFGASDFGY AAASLVMVAI VSILCLLFLS STHGFIGLWF GLTIYMSLRA AVGFWRIGTG
501: TGPWSFLRS
101: QQDTVRDHKE CIEIGINNPT EETIELIPEK HKDSLSDEFK TSSSIFSISK PPAKKRNIPS ASSALIIGGV LGLFQAVFLI SAAKPLLSFM GVKHDSPMMR
201: PSQRYLSLRS LGAPAVLLSL AAQGVFRGFK DTTTPLFATV IGDVTNIILD PIFIFVFRLG VTGAATAHVI SQYLMCGILL WKLMGQVDIF NMSTKHLQFC
301: RFMKNGFLLL MRVIAVTFCV TLSASLAARE GSTSMAAFQV CLQVWLATSL LADGYAVAGQ AILASAFAKK DYKRAAATAS RVLQLGLVLG FVLAVILGAG
401: LHFGARVFTK DDKVLHLISI GLPFVAGTQP INALAFVFDG VNFGASDFGY AAASLVMVAI VSILCLLFLS STHGFIGLWF GLTIYMSLRA AVGFWRIGTG
501: TGPWSFLRS
Arabidopsis Description
DTX42Protein DETOXIFICATION [Source:UniProtKB/TrEMBL;Acc:A0A178W9H8]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.