Factsheet for TraesCSU01G117300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
plasma membrane 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G066900.3	Wheat	plasma membrane, plastid, vacuole	98.31	98.31
TraesCS6B01G090100.1	Wheat	plasma membrane	92.13	95.91
HORVU6Hr1G012070.9	Barley	peroxisome, plastid	86.52	91.49
OQU84246	Sorghum	plasma membrane	68.73	86.56
Os02t0122200-00	Rice	plastid, vacuole	73.97	82.81
Zm00001d015060_P001	Maize	plastid	78.84	77.25
GSMUA_Achr1P16310_001	Banana	plasma membrane	55.43	69.81
CDY65815	Canola	plasma membrane	52.81	63.95
VIT_03s0038g00410.t01	Wine grape	cytosol, peroxisome, plasma membrane	56.74	59.53
CDX83192	Canola	plastid	55.24	55.04
Bra031182.1-P	Field mustard	plastid	56.55	54.71
CDX82020	Canola	plastid	56.74	54.59
KRH29367	Soybean	plastid	55.99	54.56
KRH29368	Soybean	plastid	55.62	54.4
AT2G21340.1	Thale cress	plastid	56.55	54.02
PGSC0003DMT400008778	Potato	plastid	54.31	53.31
PGSC0003DMT400008058	Potato	plastid	54.87	52.6
VIT_03s0038g00430.t01	Wine grape	plastid	55.62	52.38
Bra000583.1-P	Field mustard	plastid	50.19	52.04
AT4G39030.1	Thale cress	mitochondrion	52.81	51.93
CDY42600	Canola	mitochondrion	52.06	51.87
CDY41956	Canola	mitochondrion	51.87	51.68
Bra011880.1-P	Field mustard	mitochondrion	51.87	51.49
Solyc01g110280.2.1	Tomato	plastid	53.56	51.35
PGSC0003DMT400008050	Potato	mitochondrion, plasma membrane, plastid, vacuole	45.51	50.84
KRH24389	Soybean	extracellular	9.18	41.18

Protein Annotations

EnsemblPlants:TraesCSU01G117300.1	EnsemblPlantsGene:TraesCSU01G117300	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0006855	GO:GO:0008150	GO:GO:0015238	GO:GO:0015297	GO:GO:0016020	GO:GO:0055085
InterPro:MATE_fam	PANTHER:PTHR42893	PANTHER:PTHR42893:SF9	PFAM:PF01554	SEG:seg	TMHMM:TMhelix
MapMan:11.8.4.1	MapMan:24.2.4.1.2	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:100840108..100847030

Molecular Weight (calculated)

57132.9 Da

IEP (calculated)

9.551

GRAVY (calculated)

0.635

Length

534 amino acids

Sequence
(BLAST)

001: MSAHLRLLSA GAALPAPAPA PLRRARLLPP APPLPSARLL APHRRGLSPR AAVRVVRCAA AAGAADGGER EVGVGVDAIA AEGAGIWAQV RDVVVFAGPA
101: LGLWICGPLM SLIDTMVIGQ TSSLQLAALG PGTVFCDYLC YIFMFLSVAT SNMVATSLAN KDEELAQHQV STLLFIALTF GIGMFLFTKI FGVQVLTAFT
201: GSKNHEIISA ANTYAQIRGF AWPAVLVGLV AQSASLGMKD AWGPLKALAA ASVINGVGDI FLCSVCGYGI AGAAWATMVS QIVAAFMMMQ NLNSRGFRAF
301: SFTIPSTREL LQIFEIAAPV FVTMTSKVAF YALLTYSATS MGAITLAGHQ VMVNILCMCT VWGEPLSQTA QSFMPEMIYG ANRNLMKARM LLKSLVMIGA
401: IAGLTVGTVG TIVPWLFPSL FTNDLLVVQQ MHKVLIPYFT ALLVTPSVHS LEGTLLAGRD LRYLSQSMGA CFSIGTFLLL LVRDKFSSLT LCWWVLVFFQ
501: WSRFGSALQR LVSPTGMLYN KNFNQPEHIK VKAT

Best Arabidopsis Sequence Match ( AT2G21340.1 )
(BLAST)

001: MQIQCKTLTF TVSSIPCNPK LPFPSSLTLR SWNPSFPSFR SSAVSGPKSS LKLNRFLRNC ASTNQELVVD GETGNGSISE LQGDAANGSI SPVEVEAEVE
101: EVKVDDLATQ SIWGQMKEIV MFTGPAAGLW LCGPLMSLID TAVIGQGSSL ELAALGPATV ICDYLCYTFM FLSVATSNLV ATSLARQDKD EVQHQISILL
201: FIGLACGVTM MVLTRLFGSW ALTAFTGVKN ADIVPAANKY VQIRGLAWPA VLIGWVAQSA SLGMKDSWGP LKALAVASAI NGVGDVVLCT FLGYGIAGAA
301: WATMVSQVVA AYMMMDALNK KGYSAFSFCV PSPSELLTIF GLAAPVFITM MSKVLFYTLL VYFATSMGTN IIAAHQVMLQ IYTMSTVWGE PLSQTAQSFM
401: PELLFGINRN LPKARVLLKS LVIIGATLGI VVGTIGTAVP WLFPGIFTRD KVVTSEMHKV IIPYFLALSI TPSTHSLEGT LLAGRDLRYI SLSMTGCLAV
501: AGLLLMLLSN GGFGLRGCWY ALVGFQWARF SLSLFRLLSR DGVLYSEDTS RYAEKVKAA

Arabidopsis Description

DTX46Protein DETOXIFICATION 46, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W4G3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.