Factsheet for Zm00001d042813_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, peroxisome, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES03906	Sorghum	golgi, peroxisome, plasma membrane	95.12	89.07
Os01t0855000-01	Rice	cytosol, peroxisome, plasma membrane	89.81	85.11
TraesCS3A01G368400.1	Wheat	cytosol, peroxisome, plasma membrane	87.69	83.1
TraesCS3D01G361300.1	Wheat	golgi, plastid, unclear	87.69	83.1
TraesCS3B01G400000.1	Wheat	golgi	87.47	82.9
HORVU3Hr1G084990.1	Barley	plasma membrane	87.05	82.5
KRH49307	Soybean	plasma membrane	73.25	69.56
VIT_08s0007g02000.t01	Wine grape	golgi	73.67	69.54
GSMUA_Achr3P17610_001	Banana	cytosol, golgi, plasma membrane	65.18	68.83
KRH75836	Soybean	cytosol, plasma membrane, plastid	71.76	68.7
KRH55439	Soybean	plasma membrane	40.34	68.35
AT2G38110.1	Thale cress	cytosol, golgi, plasma membrane	71.76	67.47
CDY64226	Canola	peroxisome	71.55	67.27
Bra005137.1-P	Field mustard	peroxisome	71.55	67.27
CDX74912	Canola	peroxisome	71.34	67.07
GSMUA_Achr10P...	Banana	plasma membrane	61.36	66.74
KRH66036	Soybean	plasma membrane	70.49	66.67
Bra017137.1-P	Field mustard	cytosol, golgi, peroxisome	70.91	66.67
CDX93327	Canola	golgi, peroxisome, plasma membrane	70.7	66.47
PGSC0003DMT400052335	Potato	cytosol	70.7	65.81
Solyc09g014350.2.1	Tomato	cytosol	69.85	65.28
CDY69719	Canola	cytosol, golgi, peroxisome	59.02	65.11
KRH00171	Soybean	plastid	73.67	64.38
Zm00001d010078_P001	Maize	plasma membrane	66.24	64.2
GSMUA_Achr10P...	Banana	plasma membrane	66.45	62.6
KRG88817	Soybean	plasma membrane	37.37	62.41
Zm00001d033915_P001	Maize	plasma membrane	55.41	51.08
Zm00001d014984_P001	Maize	endoplasmic reticulum	54.99	50.29
Zm00001d032973_P001	Maize	cytosol, peroxisome, plasma membrane	54.99	49.71
Zm00001d027810_P001	Maize	cytosol, peroxisome, plasma membrane	51.8	48.22
Zm00001d010520_P001	Maize	cytosol, endoplasmic reticulum, plasma membrane	44.8	42.37
Zm00001d038366_P001	Maize	plasma membrane	44.16	40.62
Zm00001d049616_P001	Maize	plasma membrane	41.83	39.72
Zm00001d044136_P001	Maize	mitochondrion	40.34	34.86
Zm00001d007714_P001	Maize	plasma membrane	38.22	34.29
Zm00001d040265_P001	Maize	endoplasmic reticulum, plasma membrane	38.85	33.76
Zm00001d011430_P001	Maize	mitochondrion	39.7	33.57
Zm00001d034732_P001	Maize	mitochondrion	36.94	32.4
Zm00001d041596_P001	Maize	plastid	38.64	30.59

Protein Annotations

Gene3D:1.20.1440.100	Gene3D:3.40.50.1000	MapMan:35.1	UniProt:A0A1D6N6Y4	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0016746	InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR023214	ProteinID:ONM36349.1
PFAM:PF01553	PFAM:PF12710	PANTHER:PTHR15486	PANTHER:PTHR15486:SF27	InterPro:Plipid/glycerol_acylTrfase	SMART:SM00563
SUPFAM:SSF56784	SUPFAM:SSF69593	TMHMM:TMhelix	UniParc:UPI00084315EA	EnsemblPlantsGene:Zm00001d042813	EnsemblPlants:Zm00001d042813_P001
EnsemblPlants:Zm00001d042813_T001	SEG:seg	:	:	:	:

Description

glycerol-3-phosphosphate acyltransferase1

Coordinates

chr3:+:181000679..181003338

Molecular Weight (calculated)

52408.2 Da

IEP (calculated)

9.330

GRAVY (calculated)

0.050

Length

471 amino acids

Sequence
(BLAST)

001: MVASPRFKPI EECCSEGRSE QTVAADLDGT LLISRSAFPY YLLVALEAGS VLRAALLLLS VPFVYVTYAF FSESLAISTL VYISVAGLKV RSIEMVARSV
101: LPRFYAGDVH PESWRVFSSF GRRYVVTASP RVMVEPFARA FLGADKVVGT ELEVGRDGKA TGFMARPGVL VGDHKKKAVV KELGDALPDV GMGDRETDFD
201: FMSICKRPTP LVALVTFLWM PFGFALALMR VYINLPLPER IVYYTYKLMG IRLVVKGTPP PPPKKGHPGV LFVCNHRTVL DPVEVAVALR RKVSCVTYSI
301: SKFSELISPI KAVALSRERD KDAENIRRLL EEGDLVICPE GTTCREPFLL RFSALFAELT DRIVPVAINT KETMFHGSTV RGFKLMDPYF FFMNPRPTYE
401: ITFLTQLPKD LTCSGGKSPI EVANYIQKTL SGQLGFECTS ITRKEKYGML AGTDGRVPSK NKEKEKEKDK N

Best Arabidopsis Sequence Match ( AT2G38110.1 )
(BLAST)

001: MGAQEKRRRF EQISKCDVKD RSNHTVAADL DGTLLISRSA FPYYFLVALE AGSLLRALIL LVSVPFVYLT YLTISETLAI NVFVFITFAG LKIRDVELVV
101: RSVLPRFYAE DVRPDTWRIF NTFGKRYIIT ASPRIMVEPF VKTFLGVDKV LGTELEVSKS GRATGFTRKP GILVGQYKRD VVLREFGGLA SDLPDLGLGD
201: SKTDHDFMSI CKEGYMVPRT KCEPLPRNKL LSPIIFHEGR LVQRPTPLVA LLTFLWLPVG FVLSIIRVYT NIPLPERIAR YNYKLTGIKL VVNGHPPPPP
301: KPGQPGHLLV CNHRTVLDPV VTAVALGRKI SCVTYSISKF SELISPIKAV ALTRQREKDA ANIKRLLEEG DLVICPEGTT CREPFLLRFS ALFAELTDRI
401: VPVAINTKQS MFNGTTTRGY KLLDPYFAFM NPRPTYEITF LKQIPAELTC KGGKSPIEVA NYIQRVLGGT LGFECTNFTR KDKYAMLAGT DGRVPVKKEK
501: T

Arabidopsis Description

GPAT6Glycerol-3-phosphate 2-O-acyltransferase 6 [Source:UniProtKB/Swiss-Prot;Acc:O80437]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.