Factsheet for TraesCS3D01G361300.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, plastid

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid, unclear
Any Predictor:	cytosol, peroxisome, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

plastid: 22160430
golgi: 25769308
unclear: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G400000.1	Wheat	golgi	99.2	99.2
TraesCS3A01G368400.1	Wheat	cytosol, peroxisome, plasma membrane	98.79	98.79
HORVU3Hr1G084990.1	Barley	plasma membrane	97.99	97.99
Os01t0855000-01	Rice	cytosol, peroxisome, plasma membrane	90.74	90.74
EES03906	Sorghum	golgi, peroxisome, plasma membrane	90.54	89.46
Zm00001d042813_P001	Maize	plastid	83.1	87.69
KRH49307	Soybean	plasma membrane	70.83	70.97
VIT_08s0007g02000.t01	Wine grape	golgi	71.03	70.74
GSMUA_Achr3P17610_001	Banana	cytosol, golgi, plasma membrane	62.98	70.18
KRH75836	Soybean	cytosol, plasma membrane, plastid	68.21	68.9
GSMUA_Achr10P...	Banana	plasma membrane	59.96	68.82
AT2G38110.1	Thale cress	cytosol, golgi, plasma membrane	68.41	67.86
KRH66036	Soybean	plasma membrane	67.61	67.47
PGSC0003DMT400052335	Potato	cytosol	68.21	67.0
KRH55439	Soybean	plasma membrane	37.42	66.91
Bra017137.1-P	Field mustard	cytosol, golgi, peroxisome	67.4	66.87
Bra005137.1-P	Field mustard	peroxisome	67.2	66.67
CDY64226	Canola	peroxisome	67.2	66.67
Solyc09g014350.2.1	Tomato	cytosol	67.4	66.47
CDX74912	Canola	peroxisome	67.0	66.47
CDY69719	Canola	cytosol, golgi, peroxisome	56.94	66.28
CDX93327	Canola	golgi, peroxisome, plasma membrane	66.8	66.27
KRH00171	Soybean	plastid	71.43	65.86
GSMUA_Achr10P...	Banana	plasma membrane	63.98	63.6
KRG88817	Soybean	plasma membrane	35.81	63.12
TraesCS1D01G278000.1	Wheat	plasma membrane, plastid	69.42	62.61
TraesCS6D01G043000.1	Wheat	mitochondrion	55.13	54.26
TraesCS4D01G280800.1	Wheat	peroxisome	54.33	54.0
TraesCS4D01G065400.1	Wheat	plasma membrane, plastid	55.13	53.62
TraesCS1D01G132800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	53.72	52.25
TraesCS1D01G282300.1	Wheat	plasma membrane	46.48	44.77
TraesCS7D01G498800.1	Wheat	mitochondrion	40.04	38.72
TraesCS3D01G225300.1	Wheat	mitochondrion, plasma membrane	39.84	36.94
TraesCS5D01G099700.1	Wheat	plasma membrane	39.84	36.94
TraesCS3D01G333200.1	Wheat	mitochondrion	40.04	36.72
TraesCS4D01G143600.1	Wheat	mitochondrion	40.64	36.27
TraesCS2D01G136700.1	Wheat	mitochondrion	38.43	36.17
TraesCS1D01G222100.1	Wheat	mitochondrion, plastid	34.81	35.6
TraesCS3D01G155000.1	Wheat	mitochondrion	38.03	35.2
TraesCS2D01G332900.1	Wheat	mitochondrion, plastid	35.21	34.59
TraesCS5D01G512000.1	Wheat	mitochondrion	37.02	32.68
TraesCS3D01G225400.1	Wheat	mitochondrion	14.49	28.02

Protein Annotations

MapMan:21.9.1.5.1	Gene3D:3.40.50.1000	MapMan:5.2.1.2.2	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016740	GO:GO:0016746	InterPro:HAD-like_sf	InterPro:HAD_sf
InterPro:IPR023214	PFAM:PF01553	PFAM:PF12710	PANTHER:PTHR15486	PANTHER:PTHR15486:SF27	InterPro:Plipid/glycerol_acylTrfase
SMART:SM00563	SUPFAM:SSF56784	SUPFAM:SSF69593	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS3D01G361300	EnsemblPlants:TraesCS3D01G361300.1
TIGR:cd06551	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3D:-:474817722..474821912

Molecular Weight (calculated)

55301.8 Da

IEP (calculated)

9.559

GRAVY (calculated)

0.066

Length

497 amino acids

Sequence
(BLAST)

001: MASPKFKPVE ECSSEGRSGQ TVAADFDGTL LRSSNAFPYY LLVALEAGSV LRAVALLLSV PFVYVTYIFF SESLAISTLV YISVAGLKVR SIEMAARSVL
101: PKFYAQDVHP ESWRVFRSFG KRYIITASPR VMVEPFAREF LGADRVVGTE LEVGKSGKAT GFMVKPGVLV GDHKKQAVVK ELGDAVPDVG MGDRATDFNF
201: MSICKEAYLV TSRKYSPVPK NQLLTPLILH DGRLAQRPTP LVALVTFLWM PFGFALALLR VYINLPLPER IVFYVYHMMG IRLIVKGNPP PPPKKGSPGV
301: LFVCNHRTVL DPIEVAVALG RKVSCVTYSI SKFSELISPI KAVALTRERD KDAENIRRLL EEGDLVICPE GTTCREPYLL RFSALFAELT DRIVPVAINT
401: REHMFHGSTV RGFKLMDPYF FFMNPRPVYE VTFLNMLPKE LTCGGGKSPI EVANYIQKTL SDQLGFECTT ITRKEKYGIL AGTDGRVPSK NKEKEKN

Best Arabidopsis Sequence Match ( AT2G38110.1 )
(BLAST)

001: MGAQEKRRRF EQISKCDVKD RSNHTVAADL DGTLLISRSA FPYYFLVALE AGSLLRALIL LVSVPFVYLT YLTISETLAI NVFVFITFAG LKIRDVELVV
101: RSVLPRFYAE DVRPDTWRIF NTFGKRYIIT ASPRIMVEPF VKTFLGVDKV LGTELEVSKS GRATGFTRKP GILVGQYKRD VVLREFGGLA SDLPDLGLGD
201: SKTDHDFMSI CKEGYMVPRT KCEPLPRNKL LSPIIFHEGR LVQRPTPLVA LLTFLWLPVG FVLSIIRVYT NIPLPERIAR YNYKLTGIKL VVNGHPPPPP
301: KPGQPGHLLV CNHRTVLDPV VTAVALGRKI SCVTYSISKF SELISPIKAV ALTRQREKDA ANIKRLLEEG DLVICPEGTT CREPFLLRFS ALFAELTDRI
401: VPVAINTKQS MFNGTTTRGY KLLDPYFAFM NPRPTYEITF LKQIPAELTC KGGKSPIEVA NYIQRVLGGT LGFECTNFTR KDKYAMLAGT DGRVPVKKEK
501: T

Arabidopsis Description

GPAT6Glycerol-3-phosphate 2-O-acyltransferase 6 [Source:UniProtKB/Swiss-Prot;Acc:O80437]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.