Factsheet for AT1G29900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99865	Canola	plastid	90.73	93.41
Bra032344.1-P	Field mustard	plastid	91.66	92.52
CDY26307	Canola	plastid	91.41	92.26
GSMUA_Achr3P25910_001	Banana	cytosol	63.1	82.04
VIT_06s0004g03360.t01	Wine grape	plastid	80.71	80.64
PGSC0003DMT400019412	Potato	plastid	79.95	79.15
Solyc06g075340.2.1	Tomato	plastid	79.44	78.91
KRH22939	Soybean	nucleus	77.17	78.56
KRH10406	Soybean	nucleus	76.66	78.38
KRG91337	Soybean	cytosol	53.41	77.41
Zm00001d044250_P001	Maize	plastid	75.23	76.46
EES00939	Sorghum	plastid	74.73	75.75
Zm00001d011192_P001	Maize	plastid	74.81	75.64
HORVU3Hr1G049610.1	Barley	plastid	74.56	75.51
TraesCS3B01G238600.1	Wheat	plastid	74.22	75.17
TraesCS3D01G209100.1	Wheat	plastid	74.22	75.17
TraesCS3A01G206600.1	Wheat	plastid	74.14	75.09
Os01t0570700-01	Rice	cytosol, plasma membrane, plastid	20.13	73.31

Protein Annotations

KEGG:00240+6.3.5.5	KEGG:00250+6.3.5.5	Gene3D:1.10.1030.10	Gene3D:3.30.470.20	Gene3D:3.40.50.1380	Gene3D:3.40.50.20
MapMan:4.1.1.1.2.1.1	MapMan:6.2.1.1.1	EntrezGene:839868	ProteinID:AAG10606.1	ProteinID:AEE31148.1	EMBL:AF367268
ArrayExpress:AT1G29900	EnsemblPlantsGene:AT1G29900	RefSeq:AT1G29900	TAIR:AT1G29900	RefSeq:AT1G29900-TAIR-G	EnsemblPlants:AT1G29900.1
TAIR:AT1G29900.1	InterPro:ATP-grasp	EMBL:AY133548	Unigene:At.10370	Symbol:CARB	InterPro:CarbamoylP_synth_lsu
InterPro:CarbamoylP_synth_lsu_oligo	InterPro:CarbamoylP_synth_lsu_oligo_sf	InterPro:CbamoylP_synth_lsu-like_ATP-bd	InterPro:CbamoylP_synth_lsu_CPSase_dom	GO:GO:0000050	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004087	GO:GO:0004088	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005951	GO:GO:0006139
GO:GO:0006221	GO:GO:0006526	GO:GO:0006807	GO:GO:0006950	GO:GO:0007154	GO:GO:0008150
GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009605	GO:GO:0009987	GO:GO:0009991	GO:GO:0016020	GO:GO:0016036	GO:GO:0016874
GO:GO:0044205	GO:GO:0046872	InterPro:IPR011761	InterPro:IPR036897	InterPro:IPR036914	HAMAP:MF_01210_A
HAMAP:MF_01210_B	InterPro:MGS-like_dom	InterPro:MGS-like_dom_sf	InterPro:MGS_CPS_CarB	RefSeq:NP_564338.1	PFAM:PF02142
PFAM:PF02786	PFAM:PF02787	PO:PO:0000005	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230
PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100
PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PRINTS:PR00098	ScanProsite:PS00866	ScanProsite:PS00867
PFscan:PS50975	PANTHER:PTHR11405	PANTHER:PTHR11405:SF47	InterPro:PreATP-grasp_dom_sf	UniProt:Q42601	SMART:SM00851
SMART:SM01096	SUPFAM:SSF48108	SUPFAM:SSF52335	SUPFAM:SSF52440	SUPFAM:SSF56059	TIGRFAMs:TIGR01369
EMBL:U40341	UniParc:UPI00000AC9C2	SEG:seg	:	:	:

Description

CARBCarbamoyl-phosphate synthase large chain, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q42601]

Coordinates

chr1:+:10467956..10472211

Molecular Weight (calculated)

129965.0 Da

IEP (calculated)

5.449

GRAVY (calculated)

-0.095

Length

1187 amino acids

Sequence
(BLAST)

0001: MRNHCLELSS NCSSIFASSK SNPRFSPSKL SYSTFFSRSA IYYRSKPKQA SSSSSFSTFP PCLNRKSSLT HVLKPVSELA DTTTKPFSPE IVGKRTDLKK
0101: IMILGAGPIV IGQACEFDYS GTQACKALRE EGYEVILINS NPATIMTDPE TANRTYIAPM TPELVEQVIE KERPDALLPT MGGQTALNLA VALAESGALE
0201: KYGVELIGAK LGAIKKAEDR ELFKDAMKNI GLKTPPSGIG TTLDECFDIA EKIGEFPLII RPAFTLGGTG GGIAYNKEEF ESICKSGLAA SATSQVLVEK
0301: SLLGWKEYEL EVMRDLADNV VIICSIENID PMGVHTGDSI TVAPAQTLTD REYQRLRDYS IAIIREIGVE CGGSNVQFAV NPVDGEVMII EMNPRVSRSS
0401: ALASKATGFP IAKMAAKLSV GYTLDQIPND ITRKTPASFE PSIDYVVTKI PRFAFEKFPG SQPLLTTQMK SVGESMALGR TFQESFQKAL RSLECGFSGW
0501: GCAKIKELDW DWDQLKYSLR VPNPDRIHAI YAAMKKGMKI DEIYELSMVD KWFLTQLKEL VDVEQYLMSG TLSEITKEDL YEVKKRGFSD KQIAFATKTT
0601: EEEVRTKRIS LGVVPSYKRV DTCAAEFEAH TPYMYSSYDV ECESAPNNKK KVLILGGGPN RIGQGIEFDY CCCHTSFALQ DAGYETIMLN SNPETVSTDY
0701: DTSDRLYFEP LTIEDVLNVI DLEKPDGIIV QFGGQTPLKL ALPIKHYLDK HMPMSLSGAG PVRIWGTSPD SIDAAEDRER FNAILDELKI EQPKGGIAKS
0801: EADALAIAKE VGYPVVVRPS YVLGGRAMEI VYDDSRLITY LENAVQVDPE RPVLVDKYLS DAIEIDVDTL TDSYGNVVIG GIMEHIEQAG VHSGDSACML
0901: PTQTIPASCL QTIRTWTTKL AKKLNVCGLM NCQYAITTSG DVFLLEANPR ASRTVPFVSK AIGHPLAKYA ALVMSGKSLK DLNFEKEVIP KHVSVKEAVF
1001: PFEKFQGCDV ILGPEMRSTG EVMSISSEFS SAFAMAQIAA GQKLPLSGTV FLSLNDMTKP HLEKIAVSFL ELGFKIVATS GTAHFLELKG IPVERVLKLH
1101: EGRPHAADMV ANGQIHLMLI TSSGDALDQK DGRQLRQMAL AYKVPVITTV AGALATAEGI KSLKSSAIKM TALQDFFEVK NVSSLLV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.