CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 7
nucleus 1
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10406	Soybean	nucleus	95.11	95.52
KRG91337	Soybean	cytosol	63.64	90.6
GSMUA_Achr3P25910_001	Banana	cytosol	63.38	80.94
VIT_06s0004g03360.t01	Wine grape	plastid	82.25	80.72
CDX99865	Canola	plastid	78.13	79.01
Solyc06g075340.2.1	Tomato	plastid	80.7	78.74
PGSC0003DMT400019412	Potato	plastid	80.62	78.4
Bra032344.1-P	Field mustard	plastid	78.82	78.15
CDY26307	Canola	plastid	78.64	77.98
AT1G29900.1	Thale cress	plastid	78.56	77.17
Zm00001d044250_P001	Maize	plastid	76.24	76.11
Zm00001d011192_P001	Maize	plastid	75.81	75.3
EES00939	Sorghum	plastid	75.47	75.15
TraesCS3B01G238600.1	Wheat	plastid	75.3	74.91
TraesCS3D01G209100.1	Wheat	plastid	75.21	74.83
HORVU3Hr1G049610.1	Barley	plastid	75.21	74.83
TraesCS3A01G206600.1	Wheat	plastid	75.13	74.74
Os01t0570700-01	Rice	cytosol, plasma membrane, plastid	20.33	72.7

Protein Annotations

KEGG:00240+6.3.5.5	KEGG:00250+6.3.5.5	Gene3D:1.10.1030.10	EntrezGene:100819867	Gene3D:3.30.470.20	Gene3D:3.40.50.1380
Gene3D:3.40.50.20	MapMan:4.1.1.1.2.1.1	MapMan:6.2.1.1.1	EMBL:ACUP02008446	InterPro:ATP-grasp	InterPro:CarbamoylP_synth_lsu
InterPro:CarbamoylP_synth_lsu_oligo	InterPro:CarbamoylP_synth_lsu_oligo_sf	InterPro:CbamoylP_synth_lsu-like_ATP-bd	InterPro:CbamoylP_synth_lsu_CPSase_dom	EnsemblPlantsGene:GLYMA_13G328600	GO:GO:0000050
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004087	GO:GO:0004088	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006526
GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046872
InterPro:IPR011761	InterPro:IPR036897	InterPro:IPR036914	UniProt:K7M387	ProteinID:KRH22938.1	EnsemblPlants:KRH22939
ProteinID:KRH22939	ProteinID:KRH22939.1	HAMAP:MF_01210_A	HAMAP:MF_01210_B	InterPro:MGS-like_dom	InterPro:MGS-like_dom_sf
InterPro:MGS_CPS_CarB	PFAM:PF02142	PFAM:PF02786	PFAM:PF02787	PRINTS:PR00098	ScanProsite:PS00866
ScanProsite:PS00867	PFscan:PS50975	PANTHER:PTHR11405	PANTHER:PTHR11405:SF47	MetaCyc:PWY-5154	MetaCyc:PWY-5686
MetaCyc:PWY-7400	MetaCyc:PWY-7790	MetaCyc:PWY-7791	InterPro:PreATP-grasp_dom_sf	SMART:SM00851	SMART:SM01096
SUPFAM:SSF48108	SUPFAM:SSF52335	SUPFAM:SSF52440	SUPFAM:SSF56059	TIGRFAMs:TIGR01369	UniParc:UPI00023CF073

Description

hypothetical protein

Coordinates

chr13:-:42322354..42329407

Molecular Weight (calculated)

127495.0 Da

IEP (calculated)

4.950

GRAVY (calculated)

-0.089

Length

1166 amino acids

Sequence
(BLAST)

0001: MPMAYCISHF PKLPLLPSFP QSQIPFRSPK TLRSQNDAVP PTTLRGCPPP TARLNPARVR CSTVAVAEPT TAPQLGKRTD IKKILILGAG PIVIGQACEF
0101: DYSGTQACKA LREEGYEVVL INSNPATIMT DPETADRTYI TPMTPELVER VLESERPDAL LPTMGGQTAL NLAVALAESG ALEKYGVELI GAKLDAIKKA
0201: EDRELFKQAM QNIGIKTPPS GIGTTLDECL SIANDIGEYP LIVRPAFTLG GTGGGIAYNR EDLLEICKSG IAASLTNQVL IEKSLLGWKE YELEVMRDLA
0301: DNVVIICSIE NIDPMGVHTG DSITVAPAQT LTDKEYQRLR DYSIAIIREI GVECGGSNVQ FAVNPENGEV MVIEMNPRVS RSSALASKAT GFPIAKMAAK
0401: LSVGYSLDQI PNDITKKTPA SFEPSIDYVV TKIPRFAFEK FPGSQPILTT QMKSVGESMA VGRNFQESFQ KAVRSLECGY SGWGCSQVKE MNYDLEQLKY
0501: SLRVPNPERI HAIYAAMKRG MHIDEIFELS YIDKWFLMQL KELVDVESFL LSHNLSDLTN IDFYEVKKRG FSDKQIAFAT KSTEKEVRNK RLSLGVTPAY
0601: KRVDTCAAEF EANTPYMYSS YDFECESAPT TRKKVLILGG GPNRIGQGIE FDYCCCHASF ALQDAGYETI MVNSNPETVS TDYDTSDRLY FEPLTVEDVL
0701: NIIDLERPDG IIVQFGGQTP LKLSLPIQQY LDEHKPACAS GVGHVRIWGT SPDSIDIAED RERFNVMLHE LKIEHPKGGI ARSETDALAI AADIGYPVVV
0801: RPSYVLGGRA MEIVYTDDKL VTYLENAVEV DPERPVLIDK YLSDACEIDV DALADSQGNV VIGGIMEHIE QAGIHSGDSA CSIPTRTVPS SCLETIRSWT
0901: ENLAKQLNVC GLMNCQYAIT PSGDVFLLEA NPRASRTVPF VSKAIGHPLA KYASLVMSGK TLCDLQFTKE VIPKYVSVKE AVLPFSKFPG CDVFLSPEMR
1001: STGEVMGIDP SYNIAFAKAQ IAAGQKLPLS GTVFLSLNDL TKPHLQKIAK AFVENGFKIV ATSGTAHVLN LAKIPAEPVL KLHEGRPHAG DMIANGDIQL
1101: MVVTSSDDAL DRIDGLALRR MALDYKVPIV TTVNGALATA EAINSLKANS IKMIALQDFI DGEFKE

Best Arabidopsis Sequence Match ( AT1G29900.1 )
(BLAST)

0001: MRNHCLELSS NCSSIFASSK SNPRFSPSKL SYSTFFSRSA IYYRSKPKQA SSSSSFSTFP PCLNRKSSLT HVLKPVSELA DTTTKPFSPE IVGKRTDLKK
0101: IMILGAGPIV IGQACEFDYS GTQACKALRE EGYEVILINS NPATIMTDPE TANRTYIAPM TPELVEQVIE KERPDALLPT MGGQTALNLA VALAESGALE
0201: KYGVELIGAK LGAIKKAEDR ELFKDAMKNI GLKTPPSGIG TTLDECFDIA EKIGEFPLII RPAFTLGGTG GGIAYNKEEF ESICKSGLAA SATSQVLVEK
0301: SLLGWKEYEL EVMRDLADNV VIICSIENID PMGVHTGDSI TVAPAQTLTD REYQRLRDYS IAIIREIGVE CGGSNVQFAV NPVDGEVMII EMNPRVSRSS
0401: ALASKATGFP IAKMAAKLSV GYTLDQIPND ITRKTPASFE PSIDYVVTKI PRFAFEKFPG SQPLLTTQMK SVGESMALGR TFQESFQKAL RSLECGFSGW
0501: GCAKIKELDW DWDQLKYSLR VPNPDRIHAI YAAMKKGMKI DEIYELSMVD KWFLTQLKEL VDVEQYLMSG TLSEITKEDL YEVKKRGFSD KQIAFATKTT
0601: EEEVRTKRIS LGVVPSYKRV DTCAAEFEAH TPYMYSSYDV ECESAPNNKK KVLILGGGPN RIGQGIEFDY CCCHTSFALQ DAGYETIMLN SNPETVSTDY
0701: DTSDRLYFEP LTIEDVLNVI DLEKPDGIIV QFGGQTPLKL ALPIKHYLDK HMPMSLSGAG PVRIWGTSPD SIDAAEDRER FNAILDELKI EQPKGGIAKS
0801: EADALAIAKE VGYPVVVRPS YVLGGRAMEI VYDDSRLITY LENAVQVDPE RPVLVDKYLS DAIEIDVDTL TDSYGNVVIG GIMEHIEQAG VHSGDSACML
0901: PTQTIPASCL QTIRTWTTKL AKKLNVCGLM NCQYAITTSG DVFLLEANPR ASRTVPFVSK AIGHPLAKYA ALVMSGKSLK DLNFEKEVIP KHVSVKEAVF
1001: PFEKFQGCDV ILGPEMRSTG EVMSISSEFS SAFAMAQIAA GQKLPLSGTV FLSLNDMTKP HLEKIAVSFL ELGFKIVATS GTAHFLELKG IPVERVLKLH
1101: EGRPHAADMV ANGQIHLMLI TSSGDALDQK DGRQLRQMAL AYKVPVITTV AGALATAEGI KSLKSSAIKM TALQDFFEVK NVSSLLV

Arabidopsis Description

CARBCarbamoyl-phosphate synthase large chain, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q42601]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.