Factsheet for Os01t0570700-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00939	Sorghum	plastid	92.94	25.88
HORVU3Hr1G049610.1	Barley	plastid	92.64	25.77
TraesCS3B01G238600.1	Wheat	plastid	92.64	25.77
TraesCS3D01G209100.1	Wheat	plastid	92.64	25.77
Zm00001d044250_P001	Maize	plastid	92.02	25.68
TraesCS3A01G206600.1	Wheat	plastid	92.33	25.68
Zm00001d011192_P001	Maize	plastid	92.02	25.55
GSMUA_Achr3P25910_001	Banana	cytosol	70.55	25.19
PGSC0003DMT400019412	Potato	plastid	77.91	21.18
Solyc06g075340.2.1	Tomato	plastid	77.61	21.17
VIT_06s0004g03360.t01	Wine grape	plastid	76.99	21.13
KRG91337	Soybean	cytosol	52.76	21.0
KRH10406	Soybean	nucleus	72.7	20.41
CDX99865	Canola	plastid	72.09	20.38
KRH22939	Soybean	nucleus	72.7	20.33
AT1G29900.1	Thale cress	plastid	73.31	20.13
CDY26307	Canola	plastid	72.09	19.98
Bra032344.1-P	Field mustard	plastid	72.09	19.98

Protein Annotations

KEGG:00240+6.3.5.5	KEGG:00250+6.3.5.5	Gene3D:3.30.470.20	Gene3D:3.40.50.1380	MapMan:35.1	UniProt:A0A0P0V4H1
InterPro:ATP-grasp	ProteinID:BAS72784.1	InterPro:CbamoylP_synth_lsu-like_ATP-bd	InterPro:CbamoylP_synth_lsu_CPSase_dom	GO:GO:0000050	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004087	GO:GO:0004088	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006221
GO:GO:0006526	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016874	GO:GO:0044205	GO:GO:0046872
InterPro:IPR011761	InterPro:IPR036914	InterPro:MGS-like_dom	InterPro:MGS-like_dom_sf	InterPro:MGS_CPS_CarB	EnsemblPlantsGene:Os01g0570700
EnsemblPlants:Os01t0570700-01	PFAM:PF02142	PFAM:PF02786	PRINTS:PR00098	ScanProsite:PS00867	PFscan:PS50975
PANTHER:PTHR11405	PANTHER:PTHR11405:SF47	SMART:SM00851	SUPFAM:SSF52335	SUPFAM:SSF56059	UniParc:UPI0000DD8BA4
SEG:seg	:	:	:	:	:

Description

Carbamoyl-phosphate synthetase, large subunit, ATP-binding domain containing protein. (Os01t0570700-01)

Coordinates

chr1:+:21896614..21897709

Molecular Weight (calculated)

34938.4 Da

IEP (calculated)

7.901

GRAVY (calculated)

0.052

Length

326 amino acids

Sequence
(BLAST)

001: DALADSVGNV VIGGIMEHIE QAGIHSGDSA CSLPTRTVSA KCLDIIRSWT TKLAKRLNVC GLMNCQYAIT TSGEVFLLEA NPRASRTVPF VSKAIGHPLA
101: KYASLVMSGV TLPELGYTQE VVPKHVSVKE AVLPFEKFQG CDILLGPEMR STGEVMGIDY EFSGAFAKAQ IAAGQKLPLN GTVFLSLNDL TKRHLAEIGR
201: GFRELGFNII ATSGTAKVLQ LEGIPVEPVL KIHEGRPNAR DMLKNGQIQV MVITSSGDAL DSKDGLQLRR LALAYKVPII TTVDGARATI DAIKSLKNKS
301: IETLALQDYF QTTDASQNLQ AAQSAS

Best Arabidopsis Sequence Match ( AT1G29900.1 )
(BLAST)

0001: MRNHCLELSS NCSSIFASSK SNPRFSPSKL SYSTFFSRSA IYYRSKPKQA SSSSSFSTFP PCLNRKSSLT HVLKPVSELA DTTTKPFSPE IVGKRTDLKK
0101: IMILGAGPIV IGQACEFDYS GTQACKALRE EGYEVILINS NPATIMTDPE TANRTYIAPM TPELVEQVIE KERPDALLPT MGGQTALNLA VALAESGALE
0201: KYGVELIGAK LGAIKKAEDR ELFKDAMKNI GLKTPPSGIG TTLDECFDIA EKIGEFPLII RPAFTLGGTG GGIAYNKEEF ESICKSGLAA SATSQVLVEK
0301: SLLGWKEYEL EVMRDLADNV VIICSIENID PMGVHTGDSI TVAPAQTLTD REYQRLRDYS IAIIREIGVE CGGSNVQFAV NPVDGEVMII EMNPRVSRSS
0401: ALASKATGFP IAKMAAKLSV GYTLDQIPND ITRKTPASFE PSIDYVVTKI PRFAFEKFPG SQPLLTTQMK SVGESMALGR TFQESFQKAL RSLECGFSGW
0501: GCAKIKELDW DWDQLKYSLR VPNPDRIHAI YAAMKKGMKI DEIYELSMVD KWFLTQLKEL VDVEQYLMSG TLSEITKEDL YEVKKRGFSD KQIAFATKTT
0601: EEEVRTKRIS LGVVPSYKRV DTCAAEFEAH TPYMYSSYDV ECESAPNNKK KVLILGGGPN RIGQGIEFDY CCCHTSFALQ DAGYETIMLN SNPETVSTDY
0701: DTSDRLYFEP LTIEDVLNVI DLEKPDGIIV QFGGQTPLKL ALPIKHYLDK HMPMSLSGAG PVRIWGTSPD SIDAAEDRER FNAILDELKI EQPKGGIAKS
0801: EADALAIAKE VGYPVVVRPS YVLGGRAMEI VYDDSRLITY LENAVQVDPE RPVLVDKYLS DAIEIDVDTL TDSYGNVVIG GIMEHIEQAG VHSGDSACML
0901: PTQTIPASCL QTIRTWTTKL AKKLNVCGLM NCQYAITTSG DVFLLEANPR ASRTVPFVSK AIGHPLAKYA ALVMSGKSLK DLNFEKEVIP KHVSVKEAVF
1001: PFEKFQGCDV ILGPEMRSTG EVMSISSEFS SAFAMAQIAA GQKLPLSGTV FLSLNDMTKP HLEKIAVSFL ELGFKIVATS GTAHFLELKG IPVERVLKLH
1101: EGRPHAADMV ANGQIHLMLI TSSGDALDQK DGRQLRQMAL AYKVPVITTV AGALATAEGI KSLKSSAIKM TALQDFFEVK NVSSLLV

Arabidopsis Description

CARBCarbamoyl-phosphate synthase large chain, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q42601]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.