Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
20089766
plastid: 22065420 plastid: 23198870 mitochondrion: 27297264 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
20089766
doi
Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES00939 | Sorghum | plastid | 95.38 | 95.13 |
| Zm00001d011192_P001 | Maize | plastid | 95.03 | 94.55 |
| Os01t0570700-01 | Rice | cytosol, plasma membrane, plastid | 25.68 | 92.02 |
| TraesCS3D01G209100.1 | Wheat | plastid | 89.98 | 89.68 |
| TraesCS3B01G238600.1 | Wheat | plastid | 89.98 | 89.68 |
| TraesCS3A01G206600.1 | Wheat | plastid | 89.9 | 89.59 |
| HORVU3Hr1G049610.1 | Barley | plastid | 89.64 | 89.33 |
| GSMUA_Achr3P25910_001 | Banana | cytosol | 67.29 | 86.09 |
| CDX99865 | Canola | plastid | 76.2 | 77.19 |
| KRH10406 | Soybean | nucleus | 76.28 | 76.74 |
| VIT_06s0004g03360.t01 | Wine grape | plastid | 78.0 | 76.68 |
| KRH22939 | Soybean | nucleus | 76.11 | 76.24 |
| KRG91337 | Soybean | cytosol | 53.42 | 76.19 |
| CDY26307 | Canola | plastid | 76.63 | 76.11 |
| Bra032344.1-P | Field mustard | plastid | 76.54 | 76.02 |
| Solyc06g075340.2.1 | Tomato | plastid | 77.31 | 75.56 |
| AT1G29900.1 | Thale cress | plastid | 76.46 | 75.23 |
| PGSC0003DMT400019412 | Potato | plastid | 77.14 | 75.15 |
Protein Annotations
| KEGG:00240+6.3.5.5 | KEGG:00250+6.3.5.5 | Gene3D:1.10.1030.10 | EntrezGene:103651512 | Gene3D:3.30.470.20 | Gene3D:3.40.50.1380 |
| Gene3D:3.40.50.20 | MapMan:4.1.1.1.2.1.1 | MapMan:6.2.1.1.1 | UniProt:A0A1D6NJW9 | InterPro:ATP-grasp | InterPro:CarbamoylP_synth_lsu |
| InterPro:CarbamoylP_synth_lsu_oligo | InterPro:CarbamoylP_synth_lsu_oligo_sf | InterPro:CbamoylP_synth_lsu-like_ATP-bd | InterPro:CbamoylP_synth_lsu_CPSase_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006807 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0046872 |
| InterPro:IPR011761 | InterPro:IPR036897 | InterPro:IPR036914 | HAMAP:MF_01210_A | HAMAP:MF_01210_B | InterPro:MGS-like_dom |
| InterPro:MGS-like_dom_sf | InterPro:MGS_CPS_CarB | ProteinID:ONM40545.1 | PFAM:PF02142 | PFAM:PF02786 | PFAM:PF02787 |
| PRINTS:PR00098 | ScanProsite:PS00866 | ScanProsite:PS00867 | PFscan:PS50975 | PANTHER:PTHR11405 | PANTHER:PTHR11405:SF47 |
| InterPro:PreATP-grasp_dom_sf | SMART:SM00851 | SMART:SM01096 | SUPFAM:SSF48108 | SUPFAM:SSF52335 | SUPFAM:SSF52440 |
| SUPFAM:SSF56059 | TIGRFAMs:TIGR01369 | UniParc:UPI000220F988 | EnsemblPlantsGene:Zm00001d044250 | EnsemblPlants:Zm00001d044250_P001 | EnsemblPlants:Zm00001d044250_T001 |
| SEG:seg | : | : | : | : | : |
Description
Carbamoyl-phosphate synthase large chain chloroplastic
Coordinates
chr3:+:223045545..223050651
Molecular Weight (calculated)
126936.0 Da
IEP (calculated)
5.171
GRAVY (calculated)
-0.076
Length
1168 amino acids
Sequence
(BLAST)
(BLAST)
0001: MATSLYTPSQ LRPSHSQARR LGSHPRVCSA RCPARRRRAA AISVRASTDG DAAVTVRRFP AAPTKAGGLS GVKKIMILGA GPIVIGQACE FDYSGTQACK
0101: ALVEEGYEVV LVNSNPATIM TDPGLAHRTY IGPMTPTLVE RIIDAERPDA LLPTMGGQTA LNLAVSLADS GALDRLGVRL IGASLPAIRA AEDRQLFKQA
0201: MDRIGLQTPP SGIGTTLEEC LTIAEDIGEF PLIVRPAFTL GGTGGGIAYN RAEFEDICRA GLTASHTQQV LVEKSLLGWK EYELEVMRDM ADNVVIICSI
0301: ENIDPMGVHT GDSITVAPAQ TLTDKEYQRL RDYSVAIIRE IGVECGGSNV QFAVNPADGE VMVIEMNPRV SRSSALASKA TGFPIAKMAA KLSVGYTLDQ
0401: IPNDITKKTP ASFEPSIDYV VTKIPRFAFE KFPGSEPILT TQMKSVGEAM ALGRTFQESF QKAVRSLETG FAGWGCGPIK ELDWDWEQIK YSLRVPNPDR
0501: IHAIYAAFKK GMRVEDIHEI SFIDKWFLTE LRELVDVEQF LLSRSLDQLS KDDFYQVKRR GFSDKQIAFA TSSSESDVRS RRLALGVTPS YKRVDTCAAE
0601: FEANTPYMYS SYEYECESAP TNKKKVLILG GGPNRIGQGI EFDYCCCHAS FALREAGYET IMMNSNPETV STDYDTSDRL YFEPLTVEDV LNVLDLERPD
0701: GIIVQFGGQT PLKLALPIQQ YIEENKMVSA SGTGNVKIWG TSPDSIDAAE DRKRFNAILE ELGIEQPKGG IARSESDALA IASEIGYPVV VRPSYVLGGR
0801: AMEIVYNDEK LIKYLATAVQ VDPERPVLVD KYLIDAVEID VDALADTAGN VVIGGIMEHI EQAGIHSGDS ACSLPTRTVS AKCLEVIRSW TTKLAKCLNV
0901: CGLMNCQYAI STSGDVFLLE ANPRASRTVP FVSKAIGHPL AKYASLVMSG VTLPELGFTE EVIPKHVSVK EAVLPFEKFQ GCDILLGPEM RSTGEVMGID
1001: YEFSGAFAKA QIAAGQKLPL SGTVFLSLND LTKRHLAEIG RGFRELGFSI VATSGTAKVL QLEGVPVEPV LKIHEGRPNA RDMLKNGQIQ IMVITSSGDA
1101: LDSKDGLQLR RLALAYKVPI TTTVDGARAS IDAIKSLKNK SIEILALQDY FQTADASEDL QAVARTAP
0101: ALVEEGYEVV LVNSNPATIM TDPGLAHRTY IGPMTPTLVE RIIDAERPDA LLPTMGGQTA LNLAVSLADS GALDRLGVRL IGASLPAIRA AEDRQLFKQA
0201: MDRIGLQTPP SGIGTTLEEC LTIAEDIGEF PLIVRPAFTL GGTGGGIAYN RAEFEDICRA GLTASHTQQV LVEKSLLGWK EYELEVMRDM ADNVVIICSI
0301: ENIDPMGVHT GDSITVAPAQ TLTDKEYQRL RDYSVAIIRE IGVECGGSNV QFAVNPADGE VMVIEMNPRV SRSSALASKA TGFPIAKMAA KLSVGYTLDQ
0401: IPNDITKKTP ASFEPSIDYV VTKIPRFAFE KFPGSEPILT TQMKSVGEAM ALGRTFQESF QKAVRSLETG FAGWGCGPIK ELDWDWEQIK YSLRVPNPDR
0501: IHAIYAAFKK GMRVEDIHEI SFIDKWFLTE LRELVDVEQF LLSRSLDQLS KDDFYQVKRR GFSDKQIAFA TSSSESDVRS RRLALGVTPS YKRVDTCAAE
0601: FEANTPYMYS SYEYECESAP TNKKKVLILG GGPNRIGQGI EFDYCCCHAS FALREAGYET IMMNSNPETV STDYDTSDRL YFEPLTVEDV LNVLDLERPD
0701: GIIVQFGGQT PLKLALPIQQ YIEENKMVSA SGTGNVKIWG TSPDSIDAAE DRKRFNAILE ELGIEQPKGG IARSESDALA IASEIGYPVV VRPSYVLGGR
0801: AMEIVYNDEK LIKYLATAVQ VDPERPVLVD KYLIDAVEID VDALADTAGN VVIGGIMEHI EQAGIHSGDS ACSLPTRTVS AKCLEVIRSW TTKLAKCLNV
0901: CGLMNCQYAI STSGDVFLLE ANPRASRTVP FVSKAIGHPL AKYASLVMSG VTLPELGFTE EVIPKHVSVK EAVLPFEKFQ GCDILLGPEM RSTGEVMGID
1001: YEFSGAFAKA QIAAGQKLPL SGTVFLSLND LTKRHLAEIG RGFRELGFSI VATSGTAKVL QLEGVPVEPV LKIHEGRPNA RDMLKNGQIQ IMVITSSGDA
1101: LDSKDGLQLR RLALAYKVPI TTTVDGARAS IDAIKSLKNK SIEILALQDY FQTADASEDL QAVARTAP
0001: MRNHCLELSS NCSSIFASSK SNPRFSPSKL SYSTFFSRSA IYYRSKPKQA SSSSSFSTFP PCLNRKSSLT HVLKPVSELA DTTTKPFSPE IVGKRTDLKK
0101: IMILGAGPIV IGQACEFDYS GTQACKALRE EGYEVILINS NPATIMTDPE TANRTYIAPM TPELVEQVIE KERPDALLPT MGGQTALNLA VALAESGALE
0201: KYGVELIGAK LGAIKKAEDR ELFKDAMKNI GLKTPPSGIG TTLDECFDIA EKIGEFPLII RPAFTLGGTG GGIAYNKEEF ESICKSGLAA SATSQVLVEK
0301: SLLGWKEYEL EVMRDLADNV VIICSIENID PMGVHTGDSI TVAPAQTLTD REYQRLRDYS IAIIREIGVE CGGSNVQFAV NPVDGEVMII EMNPRVSRSS
0401: ALASKATGFP IAKMAAKLSV GYTLDQIPND ITRKTPASFE PSIDYVVTKI PRFAFEKFPG SQPLLTTQMK SVGESMALGR TFQESFQKAL RSLECGFSGW
0501: GCAKIKELDW DWDQLKYSLR VPNPDRIHAI YAAMKKGMKI DEIYELSMVD KWFLTQLKEL VDVEQYLMSG TLSEITKEDL YEVKKRGFSD KQIAFATKTT
0601: EEEVRTKRIS LGVVPSYKRV DTCAAEFEAH TPYMYSSYDV ECESAPNNKK KVLILGGGPN RIGQGIEFDY CCCHTSFALQ DAGYETIMLN SNPETVSTDY
0701: DTSDRLYFEP LTIEDVLNVI DLEKPDGIIV QFGGQTPLKL ALPIKHYLDK HMPMSLSGAG PVRIWGTSPD SIDAAEDRER FNAILDELKI EQPKGGIAKS
0801: EADALAIAKE VGYPVVVRPS YVLGGRAMEI VYDDSRLITY LENAVQVDPE RPVLVDKYLS DAIEIDVDTL TDSYGNVVIG GIMEHIEQAG VHSGDSACML
0901: PTQTIPASCL QTIRTWTTKL AKKLNVCGLM NCQYAITTSG DVFLLEANPR ASRTVPFVSK AIGHPLAKYA ALVMSGKSLK DLNFEKEVIP KHVSVKEAVF
1001: PFEKFQGCDV ILGPEMRSTG EVMSISSEFS SAFAMAQIAA GQKLPLSGTV FLSLNDMTKP HLEKIAVSFL ELGFKIVATS GTAHFLELKG IPVERVLKLH
1101: EGRPHAADMV ANGQIHLMLI TSSGDALDQK DGRQLRQMAL AYKVPVITTV AGALATAEGI KSLKSSAIKM TALQDFFEVK NVSSLLV
0101: IMILGAGPIV IGQACEFDYS GTQACKALRE EGYEVILINS NPATIMTDPE TANRTYIAPM TPELVEQVIE KERPDALLPT MGGQTALNLA VALAESGALE
0201: KYGVELIGAK LGAIKKAEDR ELFKDAMKNI GLKTPPSGIG TTLDECFDIA EKIGEFPLII RPAFTLGGTG GGIAYNKEEF ESICKSGLAA SATSQVLVEK
0301: SLLGWKEYEL EVMRDLADNV VIICSIENID PMGVHTGDSI TVAPAQTLTD REYQRLRDYS IAIIREIGVE CGGSNVQFAV NPVDGEVMII EMNPRVSRSS
0401: ALASKATGFP IAKMAAKLSV GYTLDQIPND ITRKTPASFE PSIDYVVTKI PRFAFEKFPG SQPLLTTQMK SVGESMALGR TFQESFQKAL RSLECGFSGW
0501: GCAKIKELDW DWDQLKYSLR VPNPDRIHAI YAAMKKGMKI DEIYELSMVD KWFLTQLKEL VDVEQYLMSG TLSEITKEDL YEVKKRGFSD KQIAFATKTT
0601: EEEVRTKRIS LGVVPSYKRV DTCAAEFEAH TPYMYSSYDV ECESAPNNKK KVLILGGGPN RIGQGIEFDY CCCHTSFALQ DAGYETIMLN SNPETVSTDY
0701: DTSDRLYFEP LTIEDVLNVI DLEKPDGIIV QFGGQTPLKL ALPIKHYLDK HMPMSLSGAG PVRIWGTSPD SIDAAEDRER FNAILDELKI EQPKGGIAKS
0801: EADALAIAKE VGYPVVVRPS YVLGGRAMEI VYDDSRLITY LENAVQVDPE RPVLVDKYLS DAIEIDVDTL TDSYGNVVIG GIMEHIEQAG VHSGDSACML
0901: PTQTIPASCL QTIRTWTTKL AKKLNVCGLM NCQYAITTSG DVFLLEANPR ASRTVPFVSK AIGHPLAKYA ALVMSGKSLK DLNFEKEVIP KHVSVKEAVF
1001: PFEKFQGCDV ILGPEMRSTG EVMSISSEFS SAFAMAQIAA GQKLPLSGTV FLSLNDMTKP HLEKIAVSFL ELGFKIVATS GTAHFLELKG IPVERVLKLH
1101: EGRPHAADMV ANGQIHLMLI TSSGDALDQK DGRQLRQMAL AYKVPVITTV AGALATAEGI KSLKSSAIKM TALQDFFEVK NVSSLLV
Arabidopsis Description
CARBCarbamoyl-phosphate synthase large chain, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q42601]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.