CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032344.1-P	Field mustard	plastid	99.49	99.49
CDX99865	Canola	plastid	96.94	98.87
AT1G29900.1	Thale cress	plastid	92.26	91.41
GSMUA_Achr3P25910_001	Banana	cytosol	64.12	82.58
VIT_06s0004g03360.t01	Wine grape	plastid	81.8	80.98
PGSC0003DMT400019412	Potato	plastid	80.36	78.82
KRH22939	Soybean	nucleus	77.98	78.64
Solyc06g075340.2.1	Tomato	plastid	79.85	78.58
KRH10406	Soybean	nucleus	77.55	78.55
KRG91337	Soybean	cytosol	54.08	77.66
Zm00001d044250_P001	Maize	plastid	76.11	76.63
EES00939	Sorghum	plastid	75.6	75.92
HORVU3Hr1G049610.1	Barley	plastid	75.34	75.6
Zm00001d011192_P001	Maize	plastid	75.43	75.55
TraesCS3D01G209100.1	Wheat	plastid	75.0	75.26
TraesCS3A01G206600.1	Wheat	plastid	74.92	75.17
TraesCS3B01G238600.1	Wheat	plastid	74.92	75.17
Os01t0570700-01	Rice	cytosol, plasma membrane, plastid	19.98	72.09

Protein Annotations

KEGG:00240+6.3.5.5	KEGG:00250+6.3.5.5	Gene3D:1.10.1030.10	Gene3D:3.30.470.20	Gene3D:3.40.50.1380	Gene3D:3.40.50.20
MapMan:4.1.1.1.2.1.1	MapMan:6.2.1.1.1	GO:A0A078GM81	UniProt:A0A078GM81	InterPro:ATP-grasp	EnsemblPlants:CDY26307
ProteinID:CDY26307	ProteinID:CDY26307.1	InterPro:CarbamoylP_synth_lsu	InterPro:CarbamoylP_synth_lsu_oligo	InterPro:CarbamoylP_synth_lsu_oligo_sf	InterPro:CbamoylP_synth_lsu-like_ATP-bd
InterPro:CbamoylP_synth_lsu_CPSase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006807
GO:GO:0008150	GO:GO:0008152	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00035008001	InterPro:IPR011761	InterPro:IPR036897
InterPro:IPR036914	HAMAP:MF_01210_A	HAMAP:MF_01210_B	InterPro:MGS-like_dom	InterPro:MGS-like_dom_sf	InterPro:MGS_CPS_CarB
PFAM:PF02142	PFAM:PF02786	PFAM:PF02787	PRINTS:PR00098	ScanProsite:PS00866	ScanProsite:PS00867
PFscan:PS50975	PANTHER:PTHR11405	PANTHER:PTHR11405:SF47	MetaCyc:PWY-5154	MetaCyc:PWY-5686	MetaCyc:PWY-7400
InterPro:PreATP-grasp_dom_sf	SMART:SM00851	SMART:SM01096	SUPFAM:SSF48108	SUPFAM:SSF52335	SUPFAM:SSF52440
SUPFAM:SSF56059	TIGRFAMs:TIGR01369	UniPathway:UPA00068	UniPathway:UPA00070	UniParc:UPI0004EDD3EC	:

Description

BnaA09g26580DBnaA09g26580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GM81]

Coordinates

chrLK032187:-:449676..453447

Molecular Weight (calculated)

128772.0 Da

IEP (calculated)

5.326

GRAVY (calculated)

-0.104

Length

1176 amino acids

Sequence
(BLAST)

0001: MSSNHCLHLS PNHSSIFTSS KLSNPRLLSR SAFNYRAKPR LTSSPFLLPC LNRKASSVVT RVLNSSTPDE KTQPFSPEIV GKRTDLKKIM ILGAGPIVIG
0101: QACEFDYSGT QACKALREEG YEVILINSNP ATIMTDPETA NRTYIAPMTP DLVEQVIAKE RPDALLPTMG GQTALNLAVA LAESGALERY GVELIGAKLD
0201: AIKKAEDREL FKEAMKSIGL KTPPSGIGNT LDECFDIAER IGEFPLIIRP AFTLGGTGGG IAYNREEFES ICKAGLAASV TSQVLVEKSL LGWKEYELEV
0301: MRDLADNVVI ICSIENIDPM GVHTGDSITV APAQTLTDRE YQRLRDYSIA IIREIGVECG GSNVQFAVNP ADGEVMIIEM NPRVSRSSAL ASKATGFPIA
0401: KMAAKLSVGY TLDQIPNDIT RKTPASFEPS IDYVVTKIPR FAFEKFPGSQ PLLTTQMKSV GESMALGRTF QESFQKALRS LETGFSGWGC AKIKELNWDW
0501: DQLKYSLRVP NPDRIHAIYA AMKKGMKVDE IHELSMVDKW FLTQLKELVD VEQYLMSGPP LAEITKADLY EVKKRGFSDK QIAFATKATE EEVRSKRISL
0601: GVVPSYKRVD TCAAEFEAHT PYMYSSYDFE CESAPNTKKK VLILGGGPNR IGQGIEFDYC CCHTSFALQD AGYETIMLNS NPETVSTDYD TSDRLYFEPL
0701: TIEDVLNVID LEKPDGIIVQ FGGQTPLKLA LPIKNYLDKH KPMSLSGEGP VRIWGTSPDS IDAAEDRERF NAILNELKIE QPKGGIAKSE SDALAIAKEI
0801: GYPVVVRPSY VLGGRAMEIV YDDSKLITYL ENAVEVDPER PVLVDRYLSD AIEIDVDTLT DSYGNVVIGG IMEHIEQAGV HSGDSACMLP TQTIPSSCLE
0901: TIRSWTTKLA KKLNVCGLMN CQYAITSSGD VFLLEANPRA SRTVPFVSKA IGHPLAKYAA LVMSGKSLKD LNFEEEVIPK HISVKEAVFP FEKFQGCDVI
1001: LGPEMRSTGE VMSISSEFPS AFAMAQIAAG QKLPLTGTVF LSLNDMTKPH LEKIAVSFLD LGFKIVATSG TAHFLELKGI PVERVLKLHE GRPHAADMVA
1101: NGQIHLMLIT SSGDALDQKD GRQLRQMALA YKVPVITTVA GALATAEGIK SLKSSAIKMT ALQDFFEVKN ESSLLV

Best Arabidopsis Sequence Match ( AT1G29900.1 )
(BLAST)

0001: MRNHCLELSS NCSSIFASSK SNPRFSPSKL SYSTFFSRSA IYYRSKPKQA SSSSSFSTFP PCLNRKSSLT HVLKPVSELA DTTTKPFSPE IVGKRTDLKK
0101: IMILGAGPIV IGQACEFDYS GTQACKALRE EGYEVILINS NPATIMTDPE TANRTYIAPM TPELVEQVIE KERPDALLPT MGGQTALNLA VALAESGALE
0201: KYGVELIGAK LGAIKKAEDR ELFKDAMKNI GLKTPPSGIG TTLDECFDIA EKIGEFPLII RPAFTLGGTG GGIAYNKEEF ESICKSGLAA SATSQVLVEK
0301: SLLGWKEYEL EVMRDLADNV VIICSIENID PMGVHTGDSI TVAPAQTLTD REYQRLRDYS IAIIREIGVE CGGSNVQFAV NPVDGEVMII EMNPRVSRSS
0401: ALASKATGFP IAKMAAKLSV GYTLDQIPND ITRKTPASFE PSIDYVVTKI PRFAFEKFPG SQPLLTTQMK SVGESMALGR TFQESFQKAL RSLECGFSGW
0501: GCAKIKELDW DWDQLKYSLR VPNPDRIHAI YAAMKKGMKI DEIYELSMVD KWFLTQLKEL VDVEQYLMSG TLSEITKEDL YEVKKRGFSD KQIAFATKTT
0601: EEEVRTKRIS LGVVPSYKRV DTCAAEFEAH TPYMYSSYDV ECESAPNNKK KVLILGGGPN RIGQGIEFDY CCCHTSFALQ DAGYETIMLN SNPETVSTDY
0701: DTSDRLYFEP LTIEDVLNVI DLEKPDGIIV QFGGQTPLKL ALPIKHYLDK HMPMSLSGAG PVRIWGTSPD SIDAAEDRER FNAILDELKI EQPKGGIAKS
0801: EADALAIAKE VGYPVVVRPS YVLGGRAMEI VYDDSRLITY LENAVQVDPE RPVLVDKYLS DAIEIDVDTL TDSYGNVVIG GIMEHIEQAG VHSGDSACML
0901: PTQTIPASCL QTIRTWTTKL AKKLNVCGLM NCQYAITTSG DVFLLEANPR ASRTVPFVSK AIGHPLAKYA ALVMSGKSLK DLNFEKEVIP KHVSVKEAVF
1001: PFEKFQGCDV ILGPEMRSTG EVMSISSEFS SAFAMAQIAA GQKLPLSGTV FLSLNDMTKP HLEKIAVSFL ELGFKIVATS GTAHFLELKG IPVERVLKLH
1101: EGRPHAADMV ANGQIHLMLI TSSGDALDQK DGRQLRQMAL AYKVPVITTV AGALATAEGI KSLKSSAIKM TALQDFFEVK NVSSLLV

Arabidopsis Description

CARBCarbamoyl-phosphate synthase large chain, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q42601]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.