Factsheet for PGSC0003DMT400019412

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g075340.2.1	Tomato	plastid	95.25	95.56
GSMUA_Achr3P25910_001	Banana	cytosol	63.39	83.24
VIT_06s0004g03360.t01	Wine grape	plastid	81.82	82.58
CDX99865	Canola	plastid	78.23	81.35
KRH10406	Soybean	nucleus	78.23	80.79
KRH22939	Soybean	nucleus	78.4	80.62
Bra032344.1-P	Field mustard	plastid	78.82	80.36
CDY26307	Canola	plastid	78.82	80.36
AT1G29900.1	Thale cress	plastid	79.15	79.95
KRG91337	Soybean	cytosol	54.05	79.12
Os01t0570700-01	Rice	cytosol, plasma membrane, plastid	21.18	77.91
Zm00001d011192_P001	Maize	plastid	75.56	77.17
Zm00001d044250_P001	Maize	plastid	75.15	77.14
HORVU3Hr1G049610.1	Barley	plastid	75.4	77.13
TraesCS3D01G209100.1	Wheat	plastid	75.31	77.05
EES00939	Sorghum	plastid	75.23	77.03
TraesCS3A01G206600.1	Wheat	plastid	75.23	76.96
TraesCS3B01G238600.1	Wheat	plastid	75.23	76.96

Protein Annotations

KEGG:00240+6.3.5.5	KEGG:00250+6.3.5.5	Gene3D:1.10.1030.10	Gene3D:3.30.470.20	Gene3D:3.40.50.1380	Gene3D:3.40.50.20
MapMan:4.1.1.1.2.1.1	MapMan:6.2.1.1.1	InterPro:ATP-grasp	InterPro:CarbamoylP_synth_lsu	InterPro:CarbamoylP_synth_lsu_oligo	InterPro:CarbamoylP_synth_lsu_oligo_sf
InterPro:CbamoylP_synth_lsu-like_ATP-bd	InterPro:CbamoylP_synth_lsu_CPSase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0046872	InterPro:IPR011761	InterPro:IPR036897
InterPro:IPR036914	UniProt:M1AC15	HAMAP:MF_01210_A	HAMAP:MF_01210_B	InterPro:MGS-like_dom	InterPro:MGS-like_dom_sf
InterPro:MGS_CPS_CarB	PFAM:PF02142	PFAM:PF02786	PFAM:PF02787	EnsemblPlantsGene:PGSC0003DMG400007504	PGSC:PGSC0003DMG400007504
EnsemblPlants:PGSC0003DMT400019412	PRINTS:PR00098	ScanProsite:PS00866	ScanProsite:PS00867	PFscan:PS50975	PANTHER:PTHR11405
PANTHER:PTHR11405:SF47	InterPro:PreATP-grasp_dom_sf	SMART:SM00851	SMART:SM01096	SUPFAM:SSF48108	SUPFAM:SSF52335
SUPFAM:SSF52440	SUPFAM:SSF56059	TIGRFAMs:TIGR01369	UniParc:UPI0002969B70	SEG:seg	:

Description

Carbamoyl phosphate synthase large subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400007504]

Coordinates

chr6:-:55904773..55910691

Molecular Weight (calculated)

132081.0 Da

IEP (calculated)

5.286

GRAVY (calculated)

-0.143

Length

1199 amino acids

Sequence
(BLAST)

0001: MDYCMNRCEN AAYRLISSSS SYVLPSSRIY SSTTQLFPRF PQSTYKKSSF LHLHSRPCVF SNNTHLRKRV NSIVNEQIND DSVQKGFLGT EKLGKRTDIK
0101: KILILGAGPI VIGQACEFDY SGTQACKALR EEGYEVILIN SNPATIMTDP ETADRTYIEP MTPELVEQVL ENERPDALLP TMGGQTALNL AVALAESGVL
0201: DKYGVELIGA KLDAIKKAED RDLFKQAMKN IGIKTPPSGI GNTLEDCFEI ASKIGEFPLI IRPAFTLGGT GGGIAYNREE FEAICKSGLA ASLTSQVLVE
0301: KSLLGWKEYE LEVMRDLADN VVIICSIENI DPMGVHTGDS ITVAPAQTLT DKEYQRLRDY SIAIIREIGV ECGGSNVQFA VNPVDGEVMV IEMNPRVSRS
0401: SALASKATGF PIAKMAAKLS VGYSLDQIPN DITKKTPASF EPSIDYVVTK IPRFAFEKFP GSEAILTTQM KSVGESMAVG RTFQESFQKA VRSLECGYSG
0501: WGCAQVKELN WDWDKLKYSL RVPNPDRIHA IYAAMKRGMK VDDIHELSYI DKWFLTQLRE LVDVEQFLLA HSLSDLTKDD FYEVKKRGFS DRQIAFVTKS
0601: SEQEVRSRRL SLGVKPAYKR VDTCAAEFEA DTPYMYSSYD LECESAPTQR KKVLILGGGP NRIGQGIEFD YCCCHTSFAL QDAGYETIMM NSNPETVSTD
0701: YDTSDRLYFE PLTVEDVFNI IDLEGPDGII VQFGGQTPLK LALPIQNYLD ERRPKSKSEA GFVSIWGTSP DNIDAAEDRE RFNAILNELQ IAQPKGGIAK
0801: SEKDALAIAA EVGYPVVVRP SYVLGGRAME IVYNNEKLVT YLENAVKVDP ERPVLIDRYL TDAVEIDIDA LADLYGNVVI GGIMEHIEQA GVHSGDSACM
0901: LPTKTVSDSC LETIRSWTTK LAKRLNVCGL MNCQYAITTS GEVFLLEANP RASRTVPFVS KAIGHPLAKY AALVMSGKSL YDLNFTKEVI PRHVSVKEAV
1001: LPFEKFQGCD VLLGPEMRST GEVMGIHYES SIAFAKAQIA AGQKMPLSGT LFLSLNELTK PHLTTIARAF SELGFQIIAT SGTARVLELE GMPVERVLKM
1101: HEGRPHAADL IANGQIQLMV ITSSGDALDQ IDGRKLRRMA LAYKIPVITT VAGALATADA IKSLKCNKIK MTALQDYFDE QKVTAELKNF QSASSVSSS

Best Arabidopsis Sequence Match ( AT1G29900.1 )
(BLAST)

0001: MRNHCLELSS NCSSIFASSK SNPRFSPSKL SYSTFFSRSA IYYRSKPKQA SSSSSFSTFP PCLNRKSSLT HVLKPVSELA DTTTKPFSPE IVGKRTDLKK
0101: IMILGAGPIV IGQACEFDYS GTQACKALRE EGYEVILINS NPATIMTDPE TANRTYIAPM TPELVEQVIE KERPDALLPT MGGQTALNLA VALAESGALE
0201: KYGVELIGAK LGAIKKAEDR ELFKDAMKNI GLKTPPSGIG TTLDECFDIA EKIGEFPLII RPAFTLGGTG GGIAYNKEEF ESICKSGLAA SATSQVLVEK
0301: SLLGWKEYEL EVMRDLADNV VIICSIENID PMGVHTGDSI TVAPAQTLTD REYQRLRDYS IAIIREIGVE CGGSNVQFAV NPVDGEVMII EMNPRVSRSS
0401: ALASKATGFP IAKMAAKLSV GYTLDQIPND ITRKTPASFE PSIDYVVTKI PRFAFEKFPG SQPLLTTQMK SVGESMALGR TFQESFQKAL RSLECGFSGW
0501: GCAKIKELDW DWDQLKYSLR VPNPDRIHAI YAAMKKGMKI DEIYELSMVD KWFLTQLKEL VDVEQYLMSG TLSEITKEDL YEVKKRGFSD KQIAFATKTT
0601: EEEVRTKRIS LGVVPSYKRV DTCAAEFEAH TPYMYSSYDV ECESAPNNKK KVLILGGGPN RIGQGIEFDY CCCHTSFALQ DAGYETIMLN SNPETVSTDY
0701: DTSDRLYFEP LTIEDVLNVI DLEKPDGIIV QFGGQTPLKL ALPIKHYLDK HMPMSLSGAG PVRIWGTSPD SIDAAEDRER FNAILDELKI EQPKGGIAKS
0801: EADALAIAKE VGYPVVVRPS YVLGGRAMEI VYDDSRLITY LENAVQVDPE RPVLVDKYLS DAIEIDVDTL TDSYGNVVIG GIMEHIEQAG VHSGDSACML
0901: PTQTIPASCL QTIRTWTTKL AKKLNVCGLM NCQYAITTSG DVFLLEANPR ASRTVPFVSK AIGHPLAKYA ALVMSGKSLK DLNFEKEVIP KHVSVKEAVF
1001: PFEKFQGCDV ILGPEMRSTG EVMSISSEFS SAFAMAQIAA GQKLPLSGTV FLSLNDMTKP HLEKIAVSFL ELGFKIVATS GTAHFLELKG IPVERVLKLH
1101: EGRPHAADMV ANGQIHLMLI TSSGDALDQK DGRQLRQMAL AYKVPVITTV AGALATAEGI KSLKSSAIKM TALQDFFEVK NVSSLLV

Arabidopsis Description

CARBCarbamoyl-phosphate synthase large chain, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q42601]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.