Factsheet for VIT_06s0004g03360.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P25910_001	Banana	cytosol	65.74	85.54
CDX99865	Canola	plastid	80.3	82.74
KRH22939	Soybean	nucleus	80.72	82.25
Solyc06g075340.2.1	Tomato	plastid	82.66	82.18
PGSC0003DMT400019412	Potato	plastid	82.58	81.82
Bra032344.1-P	Field mustard	plastid	80.98	81.8
CDY26307	Canola	plastid	80.98	81.8
KRH10406	Soybean	nucleus	79.8	81.65
KRG91337	Soybean	cytosol	55.98	81.2
AT1G29900.1	Thale cress	plastid	80.64	80.71
Zm00001d044250_P001	Maize	plastid	76.68	78.0
TraesCS3D01G209100.1	Wheat	plastid	76.68	77.73
HORVU3Hr1G049610.1	Barley	plastid	76.6	77.65
TraesCS3A01G206600.1	Wheat	plastid	76.6	77.65
TraesCS3B01G238600.1	Wheat	plastid	76.6	77.65
EES00939	Sorghum	plastid	76.52	77.63
Zm00001d011192_P001	Maize	plastid	76.26	77.17
Os01t0570700-01	Rice	cytosol, plasma membrane, plastid	21.13	76.99

Protein Annotations

KEGG:00240+6.3.5.5	KEGG:00250+6.3.5.5	Gene3D:1.10.1030.10	EntrezGene:100262205	wikigene:100262205	Gene3D:3.30.470.20
Gene3D:3.40.50.1380	Gene3D:3.40.50.20	MapMan:4.1.1.1.2.1.1	MapMan:6.2.1.1.1	EMBL:AM448162	InterPro:ATP-grasp
ProteinID:CAN69740	ProteinID:CAN69740.1	ProteinID:CCB43643	ProteinID:CCB43643.1	InterPro:CarbamoylP_synth_lsu	InterPro:CarbamoylP_synth_lsu_oligo
InterPro:CarbamoylP_synth_lsu_oligo_sf	InterPro:CbamoylP_synth_lsu-like_ATP-bd	InterPro:CbamoylP_synth_lsu_CPSase_dom	UniProt:F6GTX9	EMBL:FN594951	GO:GO:0000050
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004087	GO:GO:0004088	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006526
GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046872
InterPro:IPR011761	InterPro:IPR036897	InterPro:IPR036914	EntrezGene:LOC100262205	wikigene:LOC100262205	HAMAP:MF_01210_A
HAMAP:MF_01210_B	InterPro:MGS-like_dom	InterPro:MGS-like_dom_sf	InterPro:MGS_CPS_CarB	PFAM:PF02142	PFAM:PF02786
PFAM:PF02787	PRINTS:PR00098	ScanProsite:PS00866	ScanProsite:PS00867	PFscan:PS50975	PANTHER:PTHR11405
PANTHER:PTHR11405:SF47	InterPro:PreATP-grasp_dom_sf	SMART:SM00851	SMART:SM01096	SUPFAM:SSF48108	SUPFAM:SSF52335
SUPFAM:SSF52440	SUPFAM:SSF56059	TIGR:TC70067	TIGRFAMs:TIGR01369	UniParc:UPI000210A5F8	ArrayExpress:VIT_06s0004g03360
EnsemblPlantsGene:VIT_06s0004g03360	EnsemblPlants:VIT_06s0004g03360.t01	unigene:Vvi.13656	unigene:Vvi.25684	RefSeq:XP_002282042	RefSeq:XP_002282042.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:4210766..4216717

Molecular Weight (calculated)

129490.0 Da

IEP (calculated)

5.131

GRAVY (calculated)

-0.069

Length

1188 amino acids

Sequence
(BLAST)

0001: MGFCMNHPAT FSGRSISSSL NPYSSNPTCF RIFFYPNQLR TGSRLVGLAR LASRVRASPV RAEKGVGSDS TNGTAAFGGA PAGKRTDLKK IMILGAGPIV
0101: IGQACEFDYS GTQACKALKE EGYEVVLINS NPATIMTDPD MADKTYITPM TPELVEQVLE KERPDAILPT MGGQTALNLA VALAESGVLE KYGVELIGAK
0201: LEAIKKAEDR ELFKQAMENI GVKTPPSGIG TTLDECMEIA NSIGEFPLII RPAFTLGGTG GGIAYNREEF EAICKSGLAA SLTSQVLVEK SLLGWKEYEL
0301: EVMRDLADNV VIICSIENID PMGVHTGDSI TVAPAQTLTD KEYQRLRDYS VAIIREIGVE CGGSNVQFAV NPVDGEVMVI EMNPRVSRSS ALASKATGFP
0401: IAKMAAKLSV GYSLDQIPND ITKKTPASFE PSIDYVVTKA SIPRFAFEKF PGSQPILTTQ MKSVGESMAL GRTFQESFQK AVRSLECGYS GWGCAQLKEM
0501: DWDWEQLKYS LRVPNPDRIH AIYAAMKKGM KVDDIHELSF IDKWFLTQLK ELVDVEQFLL SRSLSDLSKD DFYEVKRRGF SDKQIAFASK STEKEVRLKR
0601: LSLGVTPAYK RVDTCAAEFE ANTPYMYSSY DFECESAPTQ RKKVLILGGG PNRIGQGIEF DYCCCHTSFA LQKAGYETIM MNSNPETVST DYDTSDRLYF
0701: EPLTVEDVLN IIDLEQPDGI IVQFGGQTPL KLALPIQNYL DEHRPLSASG VGHVRIWGTS PDSIDAAENR ERFNAILNDL KIEQPKGGIA KSEADALAIA
0801: MDIGYPVVVR PSYVLGGRAM EIVYSDDKLV TYLENAVEVD PERPVLIDRY LSDAIEIDVD ALADSEGNVV IGGIMEHIEQ AGVHSGDSAC SLPTKTIPSS
0901: CLDTIRSWTT ILAKKLNVCG LMNCQYAITA SGSVFLLEAN PRASRTVPFV SKAIGHPLAK YASLVMSGKS LHDLCFTKEV IPRHVSVKEA VLPFEKFQGC
1001: DVLLGPEMRS TGEVMGIDFE FPVAFAKAQI AAGQKLPVSG TVFLSLNDLT KPHLATIARS FIGLGFRIVS TSGTAHVLEL EGIPVERVLK MHEGRPHAGD
1101: MIANGQIQLM VITSSGDTHD QIDGRQLRRM ALAYKVPIIT TVAGASASVE AIKSLKCCAI KMIALQDFFD IESEKESTKN VQSASSFL

Best Arabidopsis Sequence Match ( AT1G29900.1 )
(BLAST)

0001: MRNHCLELSS NCSSIFASSK SNPRFSPSKL SYSTFFSRSA IYYRSKPKQA SSSSSFSTFP PCLNRKSSLT HVLKPVSELA DTTTKPFSPE IVGKRTDLKK
0101: IMILGAGPIV IGQACEFDYS GTQACKALRE EGYEVILINS NPATIMTDPE TANRTYIAPM TPELVEQVIE KERPDALLPT MGGQTALNLA VALAESGALE
0201: KYGVELIGAK LGAIKKAEDR ELFKDAMKNI GLKTPPSGIG TTLDECFDIA EKIGEFPLII RPAFTLGGTG GGIAYNKEEF ESICKSGLAA SATSQVLVEK
0301: SLLGWKEYEL EVMRDLADNV VIICSIENID PMGVHTGDSI TVAPAQTLTD REYQRLRDYS IAIIREIGVE CGGSNVQFAV NPVDGEVMII EMNPRVSRSS
0401: ALASKATGFP IAKMAAKLSV GYTLDQIPND ITRKTPASFE PSIDYVVTKI PRFAFEKFPG SQPLLTTQMK SVGESMALGR TFQESFQKAL RSLECGFSGW
0501: GCAKIKELDW DWDQLKYSLR VPNPDRIHAI YAAMKKGMKI DEIYELSMVD KWFLTQLKEL VDVEQYLMSG TLSEITKEDL YEVKKRGFSD KQIAFATKTT
0601: EEEVRTKRIS LGVVPSYKRV DTCAAEFEAH TPYMYSSYDV ECESAPNNKK KVLILGGGPN RIGQGIEFDY CCCHTSFALQ DAGYETIMLN SNPETVSTDY
0701: DTSDRLYFEP LTIEDVLNVI DLEKPDGIIV QFGGQTPLKL ALPIKHYLDK HMPMSLSGAG PVRIWGTSPD SIDAAEDRER FNAILDELKI EQPKGGIAKS
0801: EADALAIAKE VGYPVVVRPS YVLGGRAMEI VYDDSRLITY LENAVQVDPE RPVLVDKYLS DAIEIDVDTL TDSYGNVVIG GIMEHIEQAG VHSGDSACML
0901: PTQTIPASCL QTIRTWTTKL AKKLNVCGLM NCQYAITTSG DVFLLEANPR ASRTVPFVSK AIGHPLAKYA ALVMSGKSLK DLNFEKEVIP KHVSVKEAVF
1001: PFEKFQGCDV ILGPEMRSTG EVMSISSEFS SAFAMAQIAA GQKLPLSGTV FLSLNDMTKP HLEKIAVSFL ELGFKIVATS GTAHFLELKG IPVERVLKLH
1101: EGRPHAADMV ANGQIHLMLI TSSGDALDQK DGRQLRQMAL AYKVPVITTV AGALATAEGI KSLKSSAIKM TALQDFFEVK NVSSLLV

Arabidopsis Description

CARBCarbamoyl-phosphate synthase large chain, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q42601]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.